chore: switch sam attributes to bitflags#67
Open
flying-sheep wants to merge 1 commit into
Open
Conversation
flying-sheep
commented
May 17, 2026
Comment on lines
-108
to
-110
| if params.out_sam_strand_field != "intronMotif" { | ||
| attrs.remove("XS"); | ||
| } |
Member
Author
There was a problem hiding this comment.
this is handle in the verification step now.
flying-sheep
commented
May 17, 2026
Comment on lines
+45
to
+46
| // STAR maps NM attribute to 'nM' tag (mismatches only, not edit distance) | ||
| "NM" | "nM" => Self::NM, |
Member
Author
There was a problem hiding this comment.
I didn’t add two separate flags for these as they’re treated the same.
If we want to treat them differently in the future, we can add one.
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
No description provided.