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fix: limit Numba threads in Wilcoxon path of rank_genes_groups

Status: Merged (completed).

scverse/scanpynumber 4082

#4082 In scverse/scanpy;

· by JhonatanFelix was closed on Apr 24, 2026

perf: numba based aggregations for sparse data

benchmark

Status: Merged (completed).

scverse/scanpynumber 4062

#4062 In scverse/scanpy;

· by ilan-gold was closed on Apr 16, 2026

Backport PR #4062 on branch 1.12.x (perf: numba based aggregations for sparse data)

benchmark

Status: Merged (completed).

scverse/scanpynumber 4064

#4064 In scverse/scanpy;

· by meeseeksmachine was closed on Apr 16, 2026

docs: add inline example plot to sc.pl.pca_variance_ratio

Status: Merged (completed).

scverse/scanpynumber 4056

#4056 In scverse/scanpy;

· by Ekin-Kahraman was closed on Apr 17, 2026

Backport PR #4056 on branch 1.12.x (docs: add inline example plot to sc.pl.pca_variance_ratio)

Status: Merged (completed).

scverse/scanpynumber 4065

#4065 In scverse/scanpy;

· by meeseeksmachine was closed on Apr 17, 2026

docs: add inline example plot to sc.pl.correlation_matrix

Status: Merged (completed).

scverse/scanpynumber 4059

#4059 In scverse/scanpy;

· by Ekin-Kahraman was closed on Apr 17, 2026

Backport PR #4059 on branch 1.12.x (docs: add inline example plot to sc.pl.correlation_matrix)

Status: Merged (completed).

scverse/scanpynumber 4066

#4066 In scverse/scanpy;

· by meeseeksmachine was closed on Apr 17, 2026

docs: add inline example plot to sc.pl.rank_genes_groups_violin

Status: Merged (completed).

scverse/scanpynumber 4058

#4058 In scverse/scanpy;

· by Ekin-Kahraman was closed on Apr 17, 2026

Backport PR #4058 on branch 1.12.x (docs: add inline example plot to sc.pl.rank_genes_groups_violin)

Status: Merged (completed).

scverse/scanpynumber 4067

#4067 In scverse/scanpy;

· by meeseeksmachine was closed on Apr 17, 2026

docs: add inline example plot to sc.pl.rank_genes_groups_stacked_violin

Status: Merged (completed).

scverse/scanpynumber 4057

#4057 In scverse/scanpy;

· by Ekin-Kahraman was closed on Apr 17, 2026

Backport PR #4057 on branch 1.12.x (docs: add inline example plot to sc.pl.rank_genes_groups_stacked_violin)

Status: Merged (completed).

scverse/scanpynumber 4068

#4068 In scverse/scanpy;

· by meeseeksmachine was closed on Apr 17, 2026

fix: copy size array before reorder in multi-color scatter plots

Status: Closed (abandoned).

scverse/scanpynumber 4040

#4040 In scverse/scanpy;

· by Ekin-Kahraman was closed on Apr 20, 2026

perf: Combat perf improvements

Status: Merged (completed).

scverse/scanpynumber 4070

#4070 In scverse/scanpy;

· by ilaykav was closed on Apr 24, 2026

fix: avoid cumulative size reordering across multi-color subplots

Status: Merged (completed).

scverse/scanpynumber 4023

#4023 In scverse/scanpy;

· by Marius1311 was closed on Apr 20, 2026

Backport PR #4023 on branch 1.12.x (fix: avoid cumulative size reordering across multi-color subplots)

Status: Merged (completed).

scverse/scanpynumber 4075

#4075 In scverse/scanpy;

· by meeseeksmachine was closed on Apr 20, 2026

docs: clarify method vs transformer in sc.pp.neighbors

Status: Merged (completed).

scverse/scanpynumber 4079

#4079 In scverse/scanpy;

· by CuiweiG was closed on Apr 24, 2026

docs: use upstream APIs

Status: Merged (completed).

scverse/scanpynumber 4083

#4083 In scverse/scanpy;

· by flying-sheep was closed on Apr 23, 2026

Backport PR #4083 on branch 1.12.x (docs: use upstream APIs)

Status: Merged (completed).

scverse/scanpynumber 4084

#4084 In scverse/scanpy;

· by meeseeksmachine was closed on Apr 23, 2026

Backport PR #4070 on branch 1.12.x (perf: Combat perf improvements)

Status: Merged (completed).

scverse/scanpynumber 4085

#4085 In scverse/scanpy;

· by meeseeksmachine was closed on Apr 24, 2026

Backport PR #4079 on branch 1.12.x (docs: clarify method vs transformer in sc.pp.neighbors)

Status: Merged (completed).

scverse/scanpynumber 4086

#4086 In scverse/scanpy;

· by meeseeksmachine was closed on Apr 24, 2026

test: fix matplotlib deprecations

Status: Merged (completed).

scverse/scanpynumber 4091

#4091 In scverse/scanpy;

· by flying-sheep was closed on Apr 27, 2026

perf: hoist _tiecorrect out of per-group loop in vs-rest Wilcoxon

Status: Merged (completed).

scverse/scanpynumber 4090

#4090 In scverse/scanpy;

· by zboldyga was closed on Apr 28, 2026

Backport PR #4090 on branch 1.12.x (perf: hoist _tiecorrect out of per-group loop in vs-rest Wilcoxon)

Status: Merged (completed).

scverse/scanpynumber 4094

#4094 In scverse/scanpy;

· by meeseeksmachine was closed on Apr 28, 2026

docs: Highlight RSC & cleanup documentation

Status: Merged (completed).

scverse/scanpynumber 4100

#4100 In scverse/scanpy;

· by Zethson was closed on May 7, 2026

Backport PR #4100 on branch 1.12.x (docs: Highlight RSC & cleanup documentation)

Status: Merged (completed).

scverse/scanpynumber 4104

#4104 In scverse/scanpy;

· by meeseeksmachine was closed on May 7, 2026