Skip to content

Backport PR #4058 on branch 1.12.x (docs: add inline example plot to sc.pl.rank_genes_groups_violin) #4067

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Merged
flying-sheep merged 1 commit into from
Apr 17, 2026
+12 −0
Merged

Backport PR #4058 on branch 1.12.x (docs: add inline example plot to sc.pl.rank_genes_groups_violin) #4067

Changes from all commits
Commits
Show all changes
1 commit
Select commit
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
12 changes: 12 additions & 0 deletions src/scanpy/plotting/_tools/__init__.py
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -1273,6 +1273,18 @@ def rank_genes_groups_violin( # noqa: PLR0913
Size of the jitter points.
{show_save_ax}

Examples
--------
Plot violin distributions of top-ranked genes per group.

.. plot::
:context: close-figs

import scanpy as sc
adata = sc.datasets.pbmc68k_reduced()
sc.tl.rank_genes_groups(adata, "bulk_labels")
sc.pl.rank_genes_groups_violin(adata, groups=["CD34+"], n_genes=5)

"""
if key is None:
key = "rank_genes_groups"
Expand Down
Loading