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Backport PR #4057 on branch 1.12.x (docs: add inline example plot to sc.pl.rank_genes_groups_stacked_violin) #4068

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Merged
flying-sheep merged 1 commit into from
Apr 17, 2026
Merged

Backport PR #4057 on branch 1.12.x (docs: add inline example plot to sc.pl.rank_genes_groups_stacked_violin) #4068

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14 changes: 8 additions & 6 deletions src/scanpy/plotting/_tools/__init__.py
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Expand Up @@ -1053,13 +1053,15 @@ def rank_genes_groups_stacked_violin( # noqa: PLR0913

Examples
--------
>>> import scanpy as sc
>>> adata = sc.datasets.pbmc68k_reduced()
>>> sc.tl.rank_genes_groups(adata, "bulk_labels")
Plot top marker genes per group as a stacked violin.

>>> sc.pl.rank_genes_groups_stacked_violin(
... adata, n_genes=4, min_logfoldchange=4, figsize=(8, 6)
... )
.. plot::
:context: close-figs

import scanpy as sc
adata = sc.datasets.pbmc68k_reduced()
sc.tl.rank_genes_groups(adata, "bulk_labels")
sc.pl.rank_genes_groups_stacked_violin(adata, n_genes=4, min_logfoldchange=4, figsize=(8, 6))

"""
return _rank_genes_groups_plot(
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