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Feat: Asymmetric n_layers for encoder/decoder#3702

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Ori-3698-assymetric-n_layers_encoder_decoder
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Feat: Asymmetric n_layers for encoder/decoder#3702
ori-kron-wis wants to merge 4 commits into
mainfrom
Ori-3698-assymetric-n_layers_encoder_decoder

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close #3698

@ori-kron-wis ori-kron-wis self-assigned this Feb 8, 2026
@ori-kron-wis ori-kron-wis added the on-merge: backport to 1.4.x on-merge: backport to 1.4.x label Feb 8, 2026
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codecov Bot commented Feb 8, 2026

Codecov Report

✅ All modified and coverable lines are covered by tests.
✅ Project coverage is 72.61%. Comparing base (5dacc67) to head (a2cbf80).

❗ There is a different number of reports uploaded between BASE (5dacc67) and HEAD (a2cbf80). Click for more details.

HEAD has 9 uploads less than BASE
Flag BASE (5dacc67) HEAD (a2cbf80)
integration 12 3
Additional details and impacted files
@@             Coverage Diff             @@
##             main    #3702       +/-   ##
===========================================
- Coverage   88.53%   72.61%   -15.92%     
===========================================
  Files         237      237               
  Lines       23827    23834        +7     
===========================================
- Hits        21095    17308     -3787     
- Misses       2732     6526     +3794     
Flag Coverage Δ
autotune ?
cuda ?
custom_dataloader ?
integration 72.61% <100.00%> (+<0.01%) ⬆️
internet ?
jax ?
macos ?
mlflow ?
nonjax ?
optional ?
private ?
resolution ?
windows ?

Flags with carried forward coverage won't be shown. Click here to find out more.

Files with missing lines Coverage Δ
src/scvi/module/_vae.py 96.61% <100.00%> (+0.09%) ⬆️

... and 86 files with indirect coverage changes

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Only VAE has this change for now

@ori-kron-wis ori-kron-wis changed the title Feat: Asymmetric n_layers for endoder/decoder Feat: Asymmetric n_layers for encoder/decoder Feb 26, 2026
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[Bug/Feature] Asymmetric n_layers for encoder and decoder.

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