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chore: fix spatialdata access in squidpy via a helper function #718

chore: fix spatialdata access in squidpy via a helper function

chore: fix spatialdata access in squidpy via a helper function #718

Triggered via pull request May 15, 2026 07:27
Status Cancelled
Total duration 8m 45s
Artifacts 4

test.yaml

on: pull_request
get-environments
12s
get-environments
ensure-data-is-cached
1m 17s
ensure-data-is-cached
Matrix: test
Coverage (ubuntu-latest, hatch-test.py3.13-stable)
6m 59s
Coverage (ubuntu-latest, hatch-test.py3.13-stable)
Tests pass in all hatch environments
4s
Tests pass in all hatch environments
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9 errors and 6 warnings
hatch-test.py3.13-pre (PRE-RELEASE DEPENDENCIES) (ubuntu-latest)
Process completed with exit code 1.
hatch-test.py3.11-stable (ubuntu-latest)
Canceling since a higher priority waiting request for Test-refs/pull/1134/merge exists
hatch-test.py3.11-stable (ubuntu-latest)
The operation was canceled.
Coverage (ubuntu-latest, hatch-test.py3.13-stable)
Canceling since a higher priority waiting request for Test-refs/pull/1134/merge exists
Coverage (ubuntu-latest, hatch-test.py3.13-stable)
The operation was canceled.
hatch-test.py3.13-stable (macos-latest)
Canceling since a higher priority waiting request for Test-refs/pull/1134/merge exists
hatch-test.py3.13-stable (macos-latest)
The operation was canceled.
Test
Canceling since a higher priority waiting request for Test-refs/pull/1134/merge exists
Tests pass in all hatch environments
Process completed with exit code 1.
ensure-data-is-cached
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/cache@v4. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
hatch-test.py3.12-stable (ubuntu-latest)
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/cache@v4, actions/upload-artifact@v4. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
hatch-test.py3.13-pre (PRE-RELEASE DEPENDENCIES) (ubuntu-latest)
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/cache@v4, actions/upload-artifact@v4. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
hatch-test.py3.11-stable (ubuntu-latest)
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/cache@v4, actions/upload-artifact@v4. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
Coverage (ubuntu-latest, hatch-test.py3.13-stable)
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/cache@v4. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
hatch-test.py3.13-stable (macos-latest)
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/cache@v4, actions/upload-artifact@v4. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/

Artifacts

Produced during runtime
Name Size Digest
visual_test_results_Linux_hatch-test.py3.11-stable
1.55 MB
sha256:f170a5f2477154a195336e970f5fe095a2870ddee781d42e066e92ac64c2f80d
visual_test_results_Linux_hatch-test.py3.12-stable
3.09 MB
sha256:539643e939a640f90c450387f0b653d87002dadd7635461ee30c425457957638
visual_test_results_Linux_hatch-test.py3.13-pre
3.33 MB
sha256:520b53ede3df8ed98f314040b63f308ea3a6dbe92ee9ac1f506bde867263732f
visual_test_results_macOS_hatch-test.py3.13-stable
1.27 MB
sha256:0c573d463863474d9b2e91d5fdf4c1a99a7c14cd7ec32dacd94af50c765a760b