Search results

sq.gr.co_occurrence make n_splits not affect the outputs

Status: Open.

#1048 In scverse/squidpy;

· MathysHub opened on Oct 13, 2025

Improve documentation of gr.spatial_neighbors

Status: Open.

#1047 In scverse/squidpy;

· grst opened on Oct 8, 2025

ValueError: Expected <code>height</code> to be in interval

Status: Open.

#1046 In scverse/squidpy;

· Jonyyqn opened on Oct 5, 2025

Function to automatically generate tissue masks in H&amp;E

image 🔬

squidpy2.0Everything releated to a Squidpy 2.0 releaseEverything releated to a Squidpy 2.0 release

Status: Open.

#1042 In scverse/squidpy;

· timtreis opened on Sep 30, 2025

Add support for Space Ranger cell segmentation data

Status: Open.

#1037 In scverse/squidpy;

· asmlgkj opened on Sep 15, 2025

Function to QC H&amp;E images

enhancement ✨New feature or requestNew feature or request

image 🔬

squidpy2.0Everything releated to a Squidpy 2.0 releaseEverything releated to a Squidpy 2.0 release

Status: Open.

#1034 In scverse/squidpy;

· timtreis opened on Sep 13, 2025

Precise Reproducibility Issue on <code>spatial_autocorr</code> fails on some tests because of numba kernels

Status: Open.

#1030 In scverse/squidpy;

· selmanozleyen opened on Sep 3, 2025

Nothing is displayed in the image, but I can display it normally using official data in the same environment.

Status: Open.

#1022 In scverse/squidpy;

· hwr9912 opened on Aug 11, 2025

multi-layer process operations for ImageContainer

Status: Open.

#1020 In scverse/squidpy;

· ibsafa opened on Aug 5, 2025

Deprecate the current napari implementation in favour of napari-spatialdata

enhancement ✨New feature or requestNew feature or request

squidpy2.0Everything releated to a Squidpy 2.0 releaseEverything releated to a Squidpy 2.0 release

Status: Open.

#1018 In scverse/squidpy;

· timtreis opened on Jul 17, 2025

Function to remove points that don't fall into cell masks

enhancement ✨New feature or requestNew feature or request

squidpy2.0Everything releated to a Squidpy 2.0 releaseEverything releated to a Squidpy 2.0 release

Status: Open.

#1017 In scverse/squidpy;

· timtreis opened on Jul 10, 2025

<code>spatial_neighbors</code> breaks when <code>transform='spectral'</code>

Status: Open.

#1014 In scverse/squidpy;

· tjbencomo opened on Jul 9, 2025