squidpy/.github/workflows/test-notebooks.yml at 6ecab08772b9b2e82fbc7c28d5faaec7a34437c5 · scverse/squidpy · GitHub

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name: Test notebooks

on:
  push:
    branches: [main]
  pull_request:
    branches: [main]

concurrency:
  group: ${{ github.workflow }}-${{ github.ref }}
  cancel-in-progress: true

jobs:
  test:
    runs-on: ${{ matrix.os }}
    strategy:
      fail-fast: false
      matrix:
        os: [ubuntu-latest]
        python: ["3.11"]

    steps:
      - uses: actions/checkout@v3
        with:
          submodules: recursive
      - name: Set up Python ${{ matrix.python }}
        uses: actions/setup-python@v4
        with:
          python-version: ${{ matrix.python }}

      - uses: astral-sh/setup-uv@v5
        with:
          enable-cache: true
          python-version: ${{ matrix.python }}
          cache-dependency-glob: pyproject.toml
      - name: Create notebooks environment
        run: uvx hatch -v env create notebooks
      - name: Test notebooks
        env:
          MPLBACKEND: agg
          PLATFORM: ${{ matrix.os }}
          DISPLAY: :42

        run: |
          uvx hatch run notebooks:setup-squidpy-kernel
          uvx hatch run notebooks:run-notebooks