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1 parent f71421d commit 46706abCopy full SHA for 46706ab
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src/squidpy/gr/_ligrec.py
@@ -737,7 +737,9 @@ def extractor(res: Sequence[TempResult]) -> TempResult:
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mean = groups.mean().values.T # (n_genes, n_clusters)
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# see https://github.com/scverse/squidpy/pull/991#issuecomment-2888506296
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# for why we need to cast to int64 here
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- mask = groups.apply(lambda c: ((c > 0).astype(np.int64).sum() / len(c)) >= threshold).values.T # (n_genes, n_clusters)
+ mask = groups.apply(
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+ lambda c: ((c > 0).astype(np.int64).sum() / len(c)) >= threshold
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+ ).values.T # (n_genes, n_clusters)
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# (n_cells, n_genes)
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data = np.array(data[data.columns.difference(["clusters"])].values, dtype=np.float64, order="C")
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