[pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci

Author: pre-commit-ci[bot]

src/squidpy/gr/_build.py

@@ -63,14 +63,15 @@
 
 class SpatialNeighborsResult(NamedTuple):
     """Result of spatial_neighbors function.
-    
+
     Attributes
     ----------
     connectivities
         Spatial connectivities matrix.
     distances
         Spatial distances matrix.
     """
+
     connectivities: csr_matrix
     distances: csr_matrix
 

src/squidpy/gr/_nhood.py

@@ -33,14 +33,15 @@
 
 class NhoodEnrichmentResult(NamedTuple):
     """Result of nhood_enrichment function.
-    
+
     Attributes
     ----------
     zscore
         Z-score values of enrichment statistic.
     count
         Enrichment count.
     """
+
     zscore: NDArrayA
     count: NDArrayA
 

tests/graph/test_nhood.py

@@ -52,7 +52,7 @@ def test_reproducibility(self, adata: AnnData, n_jobs: int):
         # Test that the same seed produces the same results
         np.testing.assert_array_equal(res2.zscore, res1.zscore)
         np.testing.assert_array_equal(res2.count, res1.count)
-        
+
         # Test that different seeds produce different z-scores but same counts
         with pytest.raises(AssertionError):
             np.testing.assert_array_equal(res3.zscore, res2.zscore)

tests/graph/test_spatial_neighbors.py

@@ -210,9 +210,7 @@ def test_copy(self, non_visium_adata: AnnData):
     @pytest.mark.parametrize("percentile", [99.0, 95.0])
     def test_percentile_filtering(self, adata_hne: AnnData, percentile: float, coord_type="generic"):
         result = spatial_neighbors(adata_hne, coord_type=coord_type, copy=True)
-        result_filtered = spatial_neighbors(
-            adata_hne, coord_type=coord_type, percentile=percentile, copy=True
-        )
+        result_filtered = spatial_neighbors(adata_hne, coord_type=coord_type, percentile=percentile, copy=True)
 
         # check whether there are less connectivities in the filtered graph and whether the max distance is smaller
         assert not ((result.connectivities != result_filtered.connectivities).nnz == 0)