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src/squidpy/gr/_ligrec.py

Lines changed: 1 addition & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -731,6 +731,7 @@ def extractor(res: Sequence[TempResult]) -> TempResult:
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return TempResult(means=means, pvalues=pvalues)
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data = data.astype(np.float64, copy=False)
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groups = data.groupby("clusters", observed=True)
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clustering = np.array(data["clusters"].values, dtype=np.int32)
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@@ -739,7 +740,6 @@ def extractor(res: Sequence[TempResult]) -> TempResult:
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# (n_cells, n_genes)
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data = np.array(data[data.columns.difference(["clusters"])].values, dtype=np.float64, order="C")
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# all 3 should be C contiguous
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return parallelize( # type: ignore[no-any-return]
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_analysis_helper,
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np.arange(n_perms, dtype=np.int32).tolist(),

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