bring main new folder structure into dev

.github/workflows/build.yml

@@ -0,0 +1,40 @@
+name: Build ontology assets
+
+on:
+  workflow_call:
+    inputs:
+      is_release:
+        required: false
+        type: boolean
+        default: false
+
+jobs:
+
+  build:
+    runs-on: ubuntu-latest
+
+    steps:
+
+      - uses: actions/checkout@v4
+
+      - name: Set up Python
+        uses: actions/setup-python@v5
+        with:
+          python-version: '3.12'
+
+      - name: Install dependencies
+        run: |
+          python -m pip install --upgrade pip
+          pip install -r tools/python/requirements.txt
+
+      - name: build
+        run: |
+          bash ./tools/bash/build/create-combined-turtle.sh src/imaging-ontology/
+          python ./tools/python/build/create-schemas.py --input build/ontology_combined.ttl --output build/locales/en/schema.json
+
+      - name: upload assets in artifacts
+        uses: actions/upload-artifact@v4
+        if: ${{ inputs.is_release }}
+        with:
+          name: schema-bundle
+          path: build/*

.github/workflows/checks.yml

@@ -0,0 +1,35 @@
+name: SHACL validation
+
+on:
+  workflow_call:
+  pull_request:
+    paths:
+      - 'src/imaging-ontology/**'
+
+jobs:
+  validate:
+    runs-on: ubuntu-latest
+
+    steps:
+      - name: Checkout repository
+        uses: actions/checkout@v4
+
+      - name: Set up Python
+        uses: actions/setup-python@v5
+        with:
+          python-version: '3.12'
+
+      - name: Install dependencies
+        run: |
+          python -m pip install --upgrade pip
+          pip install -r tools/python/requirements.txt
+
+      - name: Build ontology bundle
+        run: |
+          bash ./tools/bash/build/create-combined-turtle.sh src/imaging-ontology/
+          python ./tools/python/build/create-schemas.py --input build/ontology_combined.ttl --output build/locales/en/schema.json
+
+      - name: SHACL validation
+        run: |
+          python tools/python/checks/shacl.py build/ontology_combined.ttl src/quality-checks/shacl-shacl.ttl
+

.github/workflows/docs.yml

@@ -0,0 +1,25 @@
+# name: Build ontology docs
+
+# on:
+#   workflow_call:
+
+# jobs:
+
+#   build:
+#     runs-on: ubuntu-latest
+
+#     steps:
+
+#       - uses: actions/checkout@v4
+
+#       - name: Set up Python
+#         uses: actions/setup-python@v5
+#         with:
+#           python-version: '3.12'
+
+#       - name: Install dependencies
+#         run: |
+#           python -m pip install --upgrade pip
+#           pip install 
+
+# TODO: BUILD DOCUMENTATION USING RESPECTER

.github/workflows/main-and-pr.yml

@@ -0,0 +1,22 @@
+name: Main and PR pipeline
+
+on:
+  push:
+    branches:
+      - main
+
+  workflow_call:
+
+  pull_request:
+    branches:
+      - main
+
+jobs:
+  checks:
+    uses: ./.github/workflows/checks.yml
+
+  build:
+    uses: ./.github/workflows/build.yml
+    with:
+      is_release: false
+

.github/workflows/release.yml

@@ -0,0 +1,38 @@
+name: Include ontology assets in the release
+
+on:
+  push:
+    tags:
+      - "v*"
+
+jobs:
+
+  build:
+    uses: ./.github/workflows/build.yml
+    with:
+      is_release: true
+
+  checks:
+    uses: ./.github/workflows/checks.yml
+    with:
+      is_release: true
+    needs: build 
+
+  make_release:
+    runs-on: ubuntu-latest
+    needs:
+      - checks
+
+    steps:
+      - uses: actions/checkout@v4
+
+      - name: get schema assets
+        uses: actions/download-artifact@v4.1.8
+        with:
+          name: schema-bundle
+          path: build/
+
+      - name: create release
+        uses: softprops/action-gh-release@v2
+        with:
+          files: build/*

.gitignore

@@ -1 +1,3 @@
 .env
+./build/*
+bin/act

CHANGELOG

@@ -0,0 +1,9 @@
+v0.1: Initial release, ex: prefixes updated, sh:nodekind sh:IRI replaced with a regex.
+v0.2: Changed shapes, ontology definitions, fairlevel validator.
+v0.3: Changed fair calculation.
+v0.4: Fixed loose nodes for PySHACL.
+v0.5: Updated definitions, cardinality of several shapes.
+v0.6: Added ontology metadata.
+v0.7: Internalize & objectify hasExecutableNotebook, update prefixes from ex: to imag:
+v0.8: Update FAIR levels, contributors+producers become authors. First+Last name becomes schema:name.
+v0.9: Support for runnable examples, dicom dataset properties, spelling mistakes.

CITATION.cff

@@ -0,0 +1,22 @@
+# This CITATION.cff file was generated with cffinit.
+# Visit https://bit.ly/cffinit to generate yours today!
+
+cff-version: 1.2.0
+title: Imaging Plaza Ontology
+message: >-
+  If you use this dataset, please cite it using the metadata
+  from this file.
+type: dataset
+authors:
+  - given-names: Robin
+    family-names: Franken
+    email: robin.franken@epfl.ch
+    affiliation: EPFL
+    orcid: 'https://orcid.org/0009-0008-0143-9118'
+  - given-names: Carlos
+    family-names: Vivar Rios
+    orcid: 'https://orcid.org/0000-0002-8076-2034'
+    email: carlos.vivarrios@epfl.ch
+    affiliation: EPFL
+url: 'https://imaging-plaza.epfl.ch/'
+license: CC-BY-4.0

CONTRIBUTING

@@ -0,0 +1,20 @@
+# Contribution Guidelines
+
+:tada: **First off, thank you for considering contributing to our project!**
+:tada:
+
+This is a community-driven project, so it's people like you that make it useful
+and successful. These are some of the many ways to contribute:
+
+- 🐛, 🎊 Submitting bug reports and feature requests.
+
+## Ground Rules
+
+The goal is to maintain a diverse community that's pleasant for everyone.
+**Please be considerate and respectful of others**. Everyone must abide by our
+[Code of Conduct][docs/code-of-conduct.md] and we encourage all to read it
+carefully.
+
+### Maintainers Guide
+
+See the [maintenance guide here](docs/development-guide.md).