seedcase-project · lwjohnst86 · Dec 8, 2025 · Dec 8, 2025
@@ -0,0 +1,11 @@
+# Changes here will be overwritten by Copier; NEVER EDIT MANUALLY
+_commit: 0.17.10
+_src_path: gh:seedcase-project/template-website
+author_family_name: Johnston
+author_given_name: Luke
+github_board_number: '18'
+github_repo: guidebook
+github_user: seedcase-project
+hosting_provider: netlify
+is_seedcase_website: true
+review_team: '@seedcase-project/developers'
@@ -0,0 +1,46 @@
+{
+  "creators": [
+    {
+      "name": "Johnston, Luke",
+      "affiliation": "Steno Diabetes Center Aarhus",
+      "orcid": "https://orcid.org/0000-0003-4169-2616"
+    },
+    {
+      "name": "Brødbæk, Signe Kirk",
+      "affiliation": "Steno Diabetes Center Aarhus",
+      "orcid": "https://orcid.org/0009-0000-2208-7088"
+    },
+    {
+      "name": "Beicher, Kristiane",
+      "affiliation": "Steno Diabetes Center Aarhus",
+      "orcid": "https://orcid.org/0000-0001-7556-9566"
+    },
+    {
+      "name": "Vago, Marton",
+      "affiliation": "Steno Diabetes Center Aarhus",
+      "orcid": "https://orcid.org/0009-0007-4628-655X"
+    }
+  ],
+  "title": "Guidebook to doing research software engineering in a team-setting",
+  "description": "This repository documents the practices, guidelines, and conventions that we've learned and applied that help us develop and release research software more effectively as solo developers and as a team. See our website at https://guidebook.seedcase-project.org/ for more details.",
+  "access_right": "open",
+  "related_identifiers": [
+    {
+      "identifier": "https://github.com/seedcase-project/guidebook",
+      "relation": "isIdenticalTo",
+      "resource_type": "other"
+    }
+  ],
+  "keywords": [
+    "quarto website",
+    "guidebook",
+    "research software engineering",
+    "teamwork",
+    "best practices",
+    "collaboration"
+  ],
+  "license": "cc-by-4.0",
+  "upload_type": "publication",
+  "publication_type": "other",
+  "language": "eng"
+}
@@ -1,5 +1,5 @@
 ---
-title: "You’ve entered the garden of missing pages"
+title: "You've entered the garden of missing pages"
 ---
 
 Let's get you back to greener grounds.

@@ -1,5 +1,90 @@
-# Guidebook
 
-[![pre-commit.ci status](https://results.pre-commit.ci/badge/github/seedcase-project/seedcase-sprout/main.svg)](https://results.pre-commit.ci/latest/github/seedcase-project/seedcase-sprout/main)
 
-This repo is ...
+# guidebook: Doing research software engineering in a team-setting
+
+<!-- TODO: Include DOI after uploading -->
+
+[![Copier](https://img.shields.io/endpoint?url=https://raw.githubusercontent.com/copier-org/copier/master/img/badge/badge-grayscale-inverted-border-teal.json?raw=true.svg)](https://github.com/copier-org/copier)
+[![GitHub
+License](https://img.shields.io/github/license/seedcase-project/guidebook.svg)](https://github.com/seedcase-project/guidebook/blob/main/LICENSE.md)
+[![GitHub
+Release](https://img.shields.io/github/v/release/seedcase-project/guidebook.svg)](https://github.com/seedcase-project/guidebook/releases/latest)
+[![Build
+website](https://github.com/seedcase-project/guidebook/actions/workflows/build-website.yml/badge.svg)](https://github.com/seedcase-project/guidebook/actions/workflows/build-website.yml)
+[![pre-commit.ci
+status](https://results.pre-commit.ci/badge/github/seedcase-project/guidebook/main.svg)](https://results.pre-commit.ci/latest/github/seedcase-project/guidebook/main)
+[![lifecycle](https://lifecycle.r-lib.org/articles/figures/lifecycle-experimental.svg)](https://lifecycle.r-lib.org/articles/stages.html#experimental)
+[![Project Status: WIP – Initial development is in progress, but there
+has not yet been a stable, usable release suitable for the
+public.](https://www.repostatus.org/badges/latest/wip.svg)](https://www.repostatus.org/#wip)
+<!-- [![Project Status: Active – The project has reached a stable, usable state and is being actively developed.](https://www.repostatus.org/badges/latest/active.svg)](https://www.repostatus.org/#active) -->
+
+This repository documents the practices, guidelines, and conventions
+that we’ve learned and applied that help us develop and release research
+software more effectively as solo developers and as a team.
+
+> [!TIP]
+>
+> This website repository was generated from the
+> [`template-website`](https://github.com/seedcase-project/template-website)
+> Seedcase template :tada:
+
+## Project files and folders
+
+- `.copier-answers.yml`: Contains the answers you gave when copying the
+  project from the template. **You should not modify this file
+  directly.**
+- `.cz.toml`:
+  [Commitizen](https://commitizen-tools.github.io/commitizen/)
+  configuration file for managing versions and changelogs.
+- `.pre-commit-config.yaml`: [Pre-commit](https://pre-commit.com/)
+  configuration file for managing and running checks before each commit.
+- `.typos.toml`: [typos](https://github.com/crate-ci/typos) spell
+  checker configuration file.
+- `.zenodo.json`: Structured citation metadata for your project when
+  archived on [Zenodo](https://zenodo.org/). This is used to add the
+  metadata to Zenodo when a GitHub release has been uploaded to Zenodo.
+- `justfile`: [`just`](https://just.systems/man/en/) configuration file
+  for scripting project tasks.
+- `.editorconfig`: Editor configuration file for
+  [EditorConfig](https://editorconfig.org/) to maintain consistent
+  coding styles across different editors and IDEs.
+- `CHANGELOG.md`: Changelog file for tracking changes in the project.
+- `CONTRIBUTING.md`: Guidelines for contributing to the project.
+- `.github/`: Contains GitHub-specific files, such as issue and pull
+  request templates, workflows,
+  [dependabot](https://docs.github.com/en/code-security/getting-started/dependabot-quickstart-guide)
+  configuration, pull request templates, and a
+  [CODEOWNERS](https://docs.github.com/en/repositories/managing-your-repositorys-settings-and-features/customizing-your-repository/about-code-owners)
+  file.
+- `_metadata.yml`: Quarto metadata file for the website, including
+  information about the project, such as the titles and GitHub names.
+- `_quarto.yml`: Quarto configuration file for the website, including
+  settings for the website, such as the theme, navigation, and other
+  options.
+
+## Contributing
+
+Check out our [contributing document](CONTRIBUTING.md) for information
+on how to contribute to the project, including how to set up your
+development environment.
+
+Please note that this project is released with a [Contributor Code of
+Conduct](CODE_OF_CONDUCT.md). By participating in this project you agree
+to abide by its terms.
+
+### Contributors
+
+The following people have contributed to this project by submitting pull
+requests :tada:
+
+[@lwjohnst86](https://github.com/lwjohnst86),
+[@signekb](https://github.com/signekb)
+
+## Licensing
+
+This project is licensed under the [CC-BY-4.0 License](LICENSE.md).
+
+## Changelog
+
+For a list of changes, see our [changelog](CHANGELOG.md) page.
@@ -0,0 +1,77 @@
+---
+format: gfm
+metadata-files:
+  - _metadata.yml
+---
+
+# {{< meta gh.repo >}}: Doing research software engineering in a team-setting
+
+{{< include /includes/_badges.qmd >}}
+
+This repository documents the practices, guidelines, and conventions
+that we've learned and applied that help us develop and release research
+software more effectively as solo developers and as a team.
+
+::: callout-tip
+This website repository was generated from the
+[`template-website`](https://github.com/seedcase-project/template-website)
+Seedcase template :tada:
+:::
+
+## Project files and folders
+
+-   `.copier-answers.yml`: Contains the answers you gave when copying
+    the project from the template. **You should not modify this file
+    directly.**
+-   `.cz.toml`:
+    [Commitizen](https://commitizen-tools.github.io/commitizen/)
+    configuration file for managing versions and changelogs.
+-   `.pre-commit-config.yaml`: [Pre-commit](https://pre-commit.com/)
+    configuration file for managing and running checks before each
+    commit.
+-   `.typos.toml`: [typos](https://github.com/crate-ci/typos) spell
+    checker configuration file.
+-   `.zenodo.json`: Structured citation metadata for your project when
+    archived on [Zenodo](https://zenodo.org/). This is used to add the
+    metadata to Zenodo when a GitHub release has been uploaded to
+    Zenodo.
+-   `justfile`: [`just`](https://just.systems/man/en/) configuration
+    file for scripting project tasks.
+-   `.editorconfig`: Editor configuration file for
+    [EditorConfig](https://editorconfig.org/) to maintain consistent
+    coding styles across different editors and IDEs.
+-   `CHANGELOG.md`: Changelog file for tracking changes in the project.
+-   `CONTRIBUTING.md`: Guidelines for contributing to the project.
+-   `.github/`: Contains GitHub-specific files, such as issue and pull
+    request templates, workflows,
+    [dependabot](https://docs.github.com/en/code-security/getting-started/dependabot-quickstart-guide)
+    configuration, pull request templates, and a
+    [CODEOWNERS](https://docs.github.com/en/repositories/managing-your-repositorys-settings-and-features/customizing-your-repository/about-code-owners)
+    file.
+-   `_metadata.yml`: Quarto metadata file for the website, including
+    information about the project, such as the titles and GitHub names.
+-   `_quarto.yml`: Quarto configuration file for the website, including
+    settings for the website, such as the theme, navigation, and other
+    options.
+
+## Contributing
+
+Check out our [contributing document](CONTRIBUTING.md) for information
+on how to contribute to the project, including how to set up your
+development environment.
+
+Please note that this project is released with a [Contributor Code of
+Conduct](CODE_OF_CONDUCT.md). By participating in this project you agree
+to abide by its terms.
+
+### Contributors
+
+{{< include /includes/_contributors.qmd >}}
+
+## Licensing
+
+This project is licensed under the [CC-BY-4.0 License](LICENSE.md).
+
+## Changelog
+
+For a list of changes, see our [changelog](CHANGELOG.md) page.
@@ -0,0 +1,3 @@
+gh:
+  repo: guidebook
+  org: seedcase-project
@@ -4,15 +4,23 @@ project:
 
 book:
   title: "Guidebook to doing research software engineering in a team-setting"
-  subtitle: "A living document for how we work in the Seedcase project"
+  subtitle: "A living document for how we work and build things in the Seedcase project"
   search:
     type: textbox
   favicon: _extensions/seedcase-project/seedcase-theme/favicon/favicon.ico
   author:
-    - "Luke W. Johnston"
-    - "Signe Kirk Brødbæk"
-    - "Kristiane Beicher"
-    - "Marton Vago"
+    - name: "Luke W. Johnston"
+      affiliation: "Steno Diabetes Center Aarhus"
+      orcid: "https://orcid.org/0000-0003-4169-2616"
+    - name: "Signe Kirk Brødbæk"
+      affiliation: "Steno Diabetes Center Aarhus"
+      orcid: "https://orcid.org/0009-0000-2208-7088"
+    - name: "Kristiane Beicher"
+      affiliation: "Steno Diabetes Center Aarhus"
+      orcid: "https://orcid.org/0000-0001-7556-9566"
+    - name: "Marton Vago"
+      affiliation: "Steno Diabetes Center Aarhus"
+      orcid: "https://orcid.org/0009-0007-4628-655X"
   date: last-modified
   repo-url: "https://github.com/seedcase-project/guidebook"
   site-url: "https://guidebook.seedcase-project.org/"

@@ -0,0 +1,9 @@
+<!-- TODO: Include DOI after uploading -->
+[![Copier](https://img.shields.io/endpoint?url=https://raw.githubusercontent.com/copier-org/copier/master/img/badge/badge-grayscale-inverted-border-teal.json?raw=true.svg)](https://github.com/copier-org/copier)
+[![GitHub License](https://img.shields.io/github/license/{{< meta gh.org >}}/{{< meta gh.repo >}}.svg)](https://github.com/{{< meta gh.org >}}/{{< meta gh.repo >}}/blob/main/LICENSE.md)
+[![GitHub Release](https://img.shields.io/github/v/release/{{< meta gh.org >}}/{{< meta gh.repo >}}.svg)](https://github.com/{{< meta gh.org >}}/{{< meta gh.repo >}}/releases/latest)
+[![Build website](https://github.com/{{< meta gh.org >}}/{{< meta gh.repo >}}/actions/workflows/build-website.yml/badge.svg)](https://github.com/{{< meta gh.org >}}/{{< meta gh.repo >}}/actions/workflows/build-website.yml)
+[![pre-commit.ci status](https://results.pre-commit.ci/badge/github/{{< meta gh.org >}}/{{< meta gh.repo >}}/main.svg)](https://results.pre-commit.ci/latest/github/{{< meta gh.org >}}/{{< meta gh.repo >}}/main)
+[![lifecycle](https://lifecycle.r-lib.org/articles/figures/lifecycle-experimental.svg)](https://lifecycle.r-lib.org/articles/stages.html#experimental)
+[![Project Status: WIP – Initial development is in progress, but there has not yet been a stable, usable release suitable for the public.](https://www.repostatus.org/badges/latest/wip.svg)](https://www.repostatus.org/#wip)
+<!-- [![Project Status: Active – The project has reached a stable, usable state and is being actively developed.](https://www.repostatus.org/badges/latest/active.svg)](https://www.repostatus.org/#active) -->
@@ -0,0 +1,3 @@
+The following people have contributed to this project by submitting pull requests :tada:
+
+ [\@lwjohnst86](https://github.com/lwjohnst86), [\@signekb](https://github.com/signekb)
@@ -1,5 +1,7 @@
 # Welcome!
 
+{{< include /includes/_badges.qmd >}}
+
 Guidebook is about...
 
 ## Who you are as the reader
@@ -11,3 +13,17 @@ think will read the documents:
 -   **Research software/data engineers**: ...
 -   **Managers or leaders**: ...
 -   **Research or development operations personnel**: ...
+
+## Contributing
+
+Check out our [contributing document](CONTRIBUTING.md) for information
+on how to contribute to the project.
+
+### Contributors
+
+{{< include /includes/_contributors.qmd >}}
+
+## Changes
+
+Check out our [changelog](CHANGELOG.md) for information on what has
+changed in each version of the guidebook.
@@ -0,0 +1,20 @@
+#!/usr/bin/env bash
+
+# Get a list of contributors to this repository and save it to
+# _contributors.qmd file (overwritten if it exists). It also:
+#
+# - Formats users into Markdown links to their GitHub profiles.
+# - Removes any usernames with the word "bot" in them.
+# - Removes the trailing comma from the list.
+repo_spec=${1}
+contributors=$(gh api \
+  -H "Accept: application/vnd.github+json" \
+  -H "X-GitHub-Api-Version: 2022-11-28" \
+  /repos/$repo_spec/contributors \
+  --template '{{range .}} [\@{{.login}}]({{.html_url}}){{"\n"}}{{end}}' | \
+  grep -v "\[bot\]" | \
+  tr '\n' ', ' | \
+  sed -e 's/,$/\n/'
+)
+
+echo "The following people have contributed to this project by submitting pull requests :tada:\n\n${contributors}"
Original file line number	Diff line number	Diff line change
		@@ -0,0 +1,3 @@
		The following people have contributed to this project by submitting pull requests :tada:

		[\@lwjohnst86](https://github.com/lwjohnst86), [\@signekb](https://github.com/signekb)