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xref-to-bkbit_id api endpoint #20

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xref-to-bkbit_id api endpoint #20

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c8c6b15
added query to get bkbit_id given an xref id
puja-trivedi Apr 22, 2025
7ac5b11
specified that biolink:xref is a typed literal(xsd:anyURI) not a plai…
puja-trivedi Apr 22, 2025
712559e
Merge branch 'sensein:main' into xref_api_endpoint
puja-trivedi Aug 28, 2025
6664a15
Merge branch 'sensein:main' into xref_api_endpoint
puja-trivedi Oct 13, 2025
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21 changes: 21 additions & 0 deletions query_service/core/routers/query.py
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Original file line number Diff line number Diff line change
Expand Up @@ -53,6 +53,27 @@ async def get_named_graphs():
}
return response_graph

@router.get("query/xref-to-bkbit")
async def get_bkbit_id(xref):
query_bkbit_id = f"""
PREFIX biolink: <https://w3id.org/biolink/vocab/>
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@tekrajchhetri tekrajchhetri Apr 23, 2025

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@puja since we are using the named graphs, please update the query to include the named graphs. I would suggest to include the named graph as one of the input that you can request from the user.

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@tekrajchhetri tekrajchhetri Sep 23, 2025

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@puja-trivedi could you also address this issue?

PREFIX xsd: <http://www.w3.org/2001/XMLSchema#>

SELECT DISTINCT ?bkbit_id
WHERE {{
?bkbit_id biolink:xref "{xref}"^^xsd:anyURI .
}}
"""

response = fetch_data_gdb(query_bkbit_id)
return {
"xref": xref,
"matched_ids": [
binding["bkbit_id"]["value"]
for binding in response["message"]["results"]["bindings"]
]
}


@router.get("/query/sparql/", include_in_schema=False)
async def sparql_query(
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