Add HTTP/SSE transport for Smithery; fix NWB Container parse error#23
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mcp_server.py: MCP_TRANSPORT=sse env var switches to HTTP+SSE (FastMCP SSE mode on 0.0.0.0:$PORT), enabling deployment to Railway/Render for Smithery and other hosted MCP platforms. Default remains stdio for Claude Desktop/Cursor local use. ingest_linkml.py: Handle schemas where is_a references a class defined outside the submitted file (e.g. NWB's NWBContainer → Container, which is a PyNWB runtime base class not in nwb.yml). class_induced_slots() now falls back to directly-declared slots on ValueError/KeyError, and is_a is silently cleared when the parent cannot be resolved within the schema view — build_registry_entities already handles None is_a. Procfile + railway.toml: Railway deployment config so the MCP server can be hosted with an HTTPS URL for Smithery registration. Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com> Claude-Session: https://claude.ai/code/session_01EXeTeJsXisxTRXay6EoBSQ
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mcp_server.py: MCP_TRANSPORT=sse env var switches to HTTP+SSE (FastMCP SSE mode on 0.0.0.0:$PORT), enabling deployment to Railway/Render for Smithery and other hosted MCP platforms. Default remains stdio for Claude Desktop/Cursor local use.
ingest_linkml.py: Handle schemas where is_a references a class defined outside the submitted file (e.g. NWB's NWBContainer → Container, which is a PyNWB runtime base class not in nwb.yml). class_induced_slots() now falls back to directly-declared slots on ValueError/KeyError, and is_a is silently cleared when the parent cannot be resolved within the schema view — build_registry_entities already handles None is_a.
Procfile + railway.toml: Railway deployment config so the MCP server can be hosted with an HTTPS URL for Smithery registration.
Claude-Session: https://claude.ai/code/session_01EXeTeJsXisxTRXay6EoBSQ