Fix GA workflow

[djarecka]

I've fixed the test workflow (it was giving an error during the installation) and I had to update poetry.lock

the pre-commit, the code has to be fixed in a different pr

[gemini-code-assist]

Summary of Changes

Hello @djarecka, I'm Gemini Code Assist¹! I'm currently reviewing this pull request and will post my feedback shortly. In the meantime, here's a summary to help you and other reviewers quickly get up to speed!

This pull request primarily focuses on stabilizing the GitHub Actions workflow by addressing installation errors. This was achieved through a comprehensive update and regeneration of the poetry.lock file, which involved bumping various package versions, adding new development tools, and refining Python version compatibility markers for several dependencies. The changes aim to ensure a smoother and more reliable continuous integration process.

Highlights

• Dependency Updates: The poetry.lock file has been regenerated, leading to updates for several packages including click (8.1.8 to 8.3.1), pre-commit (3.8.0 to 4.5.1), pytest-cov (5.0.0 to 6.3.0), and pdoc (14.7.0 to 15.0.4). This also involved updating their respective Python version compatibility and hashes.
• New Development Dependencies Added: New development dependencies codespell (2.4.1), execnet (2.1.2), psutil (7.2.2), and pytest-xdist (3.8.0) have been introduced, likely to enhance code quality checks, testing infrastructure, or performance monitoring.
• Python Version Marker Refinements: Several packages (async-timeout, exceptiongroup, isodate, scipy, tomli) had their Python version markers adjusted from < "3.11" to == "3.10", indicating a more specific targeting of Python 3.10 for these dependencies.
• Mypy Package Removal: The mypy package (version 1.15.0) has been entirely removed from the poetry.lock file, and mypy-extensions and typing-extensions had their group affiliations adjusted, suggesting a change in how type checking is managed or a temporary removal for compatibility.

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Changelog

• poetry.lock
  • Updated Poetry generation version from 2.1.1 to 2.3.2.
  • Adjusted async-timeout Python version marker to specifically target Python 3.10.
  • Updated furo version in docs extra.
  • Upgraded click from 8.1.8 to 8.3.1 and updated its minimum Python version to 3.10.
  • Added codespell (2.4.1) as a new development dependency.
  • Modified exceptiongroup Python version marker to specifically target Python 3.10.
  • Added execnet (2.1.2) as a new development dependency.
  • Updated protobuf version constraint from <6.0dev to <6.0.dev0.
  • Adjusted isodate Python version marker to specifically target Python 3.10.
  • Updated jsonschema-specifications version.
  • Updated certifi version.
  • Removed mypy package (1.15.0) entirely.
  • Changed mypy-extensions group from ['main', 'dev'] to ['main'].
  • Upgraded pdoc from 14.7.0 to 15.0.4, updated its minimum Python version to 3.9, and removed its dev extra.
  • Tightened MarkupSafe dependency constraint for pdoc.
  • Upgraded pre-commit from 3.8.0 to 4.5.1 and updated its minimum Python version to 3.10.
  • Added psutil (7.2.2) as a new development dependency.
  • Upgraded pytest-cov from 5.0.0 to 6.3.0, updated its minimum Python version to 3.9, and updated its coverage and pytest dependencies.
  • Added pluggy as a new dependency for pytest-cov.
  • Added pytest-xdist (3.8.0) as a new development dependency.
  • Adjusted scipy Python version marker to specifically target Python 3.10.
  • Adjusted tomli Python version marker to specifically target Python 3.10.
  • Changed typing-extensions group from ['main', 'dev'] to ['main'].
  • Updated the overall content-hash.

Ignored Files

• Ignored by pattern: .github/workflows/** (1)
  • .github/workflows/test.yaml

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[gemini-code-assist]

Code Review

This pull request updates the poetry.lock file to fix an issue with the test workflow. While many dependencies are updated, I've identified a critical issue with the environment markers for isodate and scipy. They have been restricted to Python 3.10 only, which will likely cause installation failures and ModuleNotFoundError on other supported Python versions (3.11, 3.12). This seems to be a side-effect of generating the lock file in a Python 3.10 environment and needs to be addressed to ensure the project works correctly across all supported Python versions.

[gemini-code-assist]

The environment marker for isodate has been restricted to only Python 3.10. Since this project supports Python versions up to 3.12 (>=3.10,<3.13), and isodate is a dependency of rdflib, this change will likely cause ModuleNotFoundError when running on Python 3.11 or 3.12. This marker seems incorrect and should probably be removed or corrected to allow isodate to be installed on all supported Python versions. This issue might stem from generating the lock file on a specific Python version.

[djarecka]

this is incorrect, the installation works for python 3.11 and 3.12

[gemini-code-assist]

The environment marker for this scipy package definition has been restricted to only Python 3.10. scipy is a dependency for pandas and should be available for all supported Python versions of the project (>=3.10,<3.13). This marker will prevent its installation on Python 3.11 and 3.12, potentially causing runtime errors. This marker should be reviewed to ensure scipy is correctly resolved for all target Python versions. It's possible this was caused by generating the lock file in a Python 3.10-only environment.

[djarecka]

this is incorrect, the installation works for python 3.11 and 3.12

[Copilot]

Pull request overview

Updates CI to resolve a GitHub Actions test workflow install failure by adjusting how Poetry is installed/cached, and refreshes the dependency lockfile accordingly.

Changes:

• Update the test workflow to install Poetry 2.3.2 and use actions/setup-python’s built-in Poetry caching.
• Remove an invalid/incorrectly placed schedule trigger from the workflow.
• Regenerate poetry.lock with Poetry 2.3.2 (resulting in dependency/version and metadata updates).

Reviewed changes

Copilot reviewed 1 out of 2 changed files in this pull request and generated 2 comments.

File	Description
poetry.lock	Regenerated lockfile using Poetry 2.3.2; updates resolved versions/markers and content hash.
.github/workflows/test.yaml	Adjusts Poetry installation and caching strategy in CI; removes the prior schedule stanza.

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