min-ibf-fpga-oneapi

• SYCL adaption of min-ibf-fpga
• includes tests for OpenCL and SYCL variant

clone:

git clone --recurse-submodules git@git.zib.de:hpc-research/Projects/seqanatfpga/min-ibf-fpga-oneapi.git

build:

mkdir build
cd build
cmake -DCMAKE_CXX_COMPILER=icpx ..
make

run tests:

cd build/test
ctest --output-on-failure

Folder Structure

• src - minimalistic SYCL host code
• include/min_ibf_fpga/backend_sycl - SYCL utilities and device code
• include/min_ibf_fpga/backend_opencl - OpenCL utilities
• test - SYCL and OpenCL tests

Notes

• A comparable minimalistic OpenCL host code can be found in min-ibf-fpga
• OpenCL tests require device code from min-ibf-fpga
• IBF tests require SeqAn3, i.e. cmake -DSEQAN3_ROOT_DIR=/path/to/seqan3 ..