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chore: update dtolnay/rust-toolchain digest to 6c977a6 CI #500: Pull request #147 opened by seqeralabs-renovate Bot
4m 26s renovate-autodiscover/dtolnay-rust-toolchain-digest
renovate-autodiscover/dtolnay-rust-toolchain-digest
4m 26s
ci: extend Dependabot to cargo, npm and docker CI #499: Pull request #146 opened by BenjaminDEMAILLE
Action required BenjaminDEMAILLE:chore/dependabot-ecosystems
BenjaminDEMAILLE:chore/dependabot-ecosystems
Action required
Migrate CLI parsing from clap to usage-rs CI #498: Pull request #145 synchronize by cursor Bot
4m 15s cursor/migrate-to-usage-rs-0231
cursor/migrate-to-usage-rs-0231
4m 15s
Migrate CLI parsing from clap to usage-rs CI #497: Pull request #145 opened by edmundmiller
5m 45s cursor/migrate-to-usage-rs-0231
cursor/migrate-to-usage-rs-0231
5m 45s
build(deps): update openssl-sys to 0.9.117 for OpenSSL 4 support CI #496: Pull request #144 opened by BenjaminDEMAILLE
Action required BenjaminDEMAILLE:fix/openssl-sys-lockfile-openssl4
BenjaminDEMAILLE:fix/openssl-sys-lockfile-openssl4
Action required
npm_and_yarn in /docs for astro, astro, astro, astro, astro, astro, astro, esbuild, js-yaml, js-yaml, nanoid, nanoid, postcss, postcss, sharp, svgo - Update #1527055364 Dependabot Updates #59: by dependabot Bot
44s main
main
44s
build(deps): update hts-sys to 2.2.1 for bindgen 0.72 compatibility CI #495: Pull request #130 synchronize by BenjaminDEMAILLE
Action required BenjaminDEMAILLE:fix/hts-sys-lockfile-bindgen
BenjaminDEMAILLE:fix/hts-sys-lockfile-bindgen
Action required
perf: buffer all output file writers (2.4x wall clock) CI #494: Pull request #139 synchronize by BenjaminDEMAILLE
Action required BenjaminDEMAILLE:perf/buffer-output-writers
BenjaminDEMAILLE:perf/buffer-output-writers
Action required
fix: make dupRadar and Qualimap outputs reproducible run-to-run CI #493: Pull request #142 opened by BenjaminDEMAILLE
Action required BenjaminDEMAILLE:fix/deterministic-output-ordering
BenjaminDEMAILLE:fix/deterministic-output-ordering
Action required
perf: parse GTF without per-line allocations (1.88x) CI #492: Pull request #140 opened by BenjaminDEMAILLE
Action required BenjaminDEMAILLE:perf/gtf-parse-memchr
BenjaminDEMAILLE:perf/gtf-parse-memchr
Action required
perf: buffer all output file writers (2.4x wall clock) CI #491: Pull request #139 opened by BenjaminDEMAILLE
Action required BenjaminDEMAILLE:perf/buffer-output-writers
BenjaminDEMAILLE:perf/buffer-output-writers
Action required
perf: switch flate2 to the zlib-rs backend (2.3x faster gzip) CI #490: Pull request #138 synchronize by BenjaminDEMAILLE
Action required BenjaminDEMAILLE:perf/flate2-zlib-ng
BenjaminDEMAILLE:perf/flate2-zlib-ng
Action required
perf: use mimalloc as the global allocator in the binary CI #489: Pull request #137 synchronize by BenjaminDEMAILLE
Action required BenjaminDEMAILLE:perf/mimalloc-allocator
BenjaminDEMAILLE:perf/mimalloc-allocator
Action required
perf: switch flate2 to the zlib-rs backend (2.3x faster gzip) CI #488: Pull request #138 opened by BenjaminDEMAILLE
Action required BenjaminDEMAILLE:perf/flate2-zlib-ng
BenjaminDEMAILLE:perf/flate2-zlib-ng
Action required
perf: use mimalloc as the global allocator in the binary CI #487: Pull request #137 opened by BenjaminDEMAILLE
Action required BenjaminDEMAILLE:perf/mimalloc-allocator
BenjaminDEMAILLE:perf/mimalloc-allocator
Action required
feat: add align subcommand for single-pass DNA alignment QC CI #486: Pull request #136 opened by BenjaminDEMAILLE
Action required BenjaminDEMAILLE:feat/align-single-pass-qc
BenjaminDEMAILLE:feat/align-single-pass-qc
Action required
feat: add bamqc subcommand for generic genomic BAM/CRAM QC CI #485: Pull request #135 opened by BenjaminDEMAILLE
-1s BenjaminDEMAILLE:feat/bamqc-mode
BenjaminDEMAILLE:feat/bamqc-mode
-1s
feat: add geneBody_coverage and read_GC RSeQC tools CI #484: Pull request #134 opened by BenjaminDEMAILLE
Action required BenjaminDEMAILLE:feat/genebody-coverage-read-gc
BenjaminDEMAILLE:feat/genebody-coverage-read-gc
Action required
feat: BED-interval rRNA quantification (split_bam) and featureCounts -M/-O CI #483: Pull request #133 opened by BenjaminDEMAILLE
Action required BenjaminDEMAILLE:feat/rrna-bed-quantification
BenjaminDEMAILLE:feat/rrna-bed-quantification
Action required
fix: fail with a GTF-specific error when no genes can be extracted CI #482: Pull request #132 opened by BenjaminDEMAILLE
Action required BenjaminDEMAILLE:fix/empty-gtf-diagnosis
BenjaminDEMAILLE:fix/empty-gtf-diagnosis
Action required
fix: count secondary+supplementary records as secondary only (flagstat) CI #481: Pull request #131 opened by BenjaminDEMAILLE
Action required BenjaminDEMAILLE:fix/flagstat-supplementary-double-count
BenjaminDEMAILLE:fix/flagstat-supplementary-double-count
Action required
build(deps): update hts-sys to 2.2.1 for bindgen 0.72 compatibility CI #480: Pull request #130 opened by BenjaminDEMAILLE
4m 31s BenjaminDEMAILLE:fix/hts-sys-lockfile-bindgen
BenjaminDEMAILLE:fix/hts-sys-lockfile-bindgen
4m 31s
npm_and_yarn in /docs for astro, astro, astro, astro, astro, astro, astro, esbuild, js-yaml, js-yaml, nanoid, nanoid, postcss, sharp, svgo - Update #1521906375 Dependabot Updates #58: by dependabot Bot
44s main
main
44s
npm_and_yarn in /docs for astro, astro, astro, astro, astro, astro, astro, esbuild, js-yaml, js-yaml, nanoid, postcss, sharp, svgo - Update #1521316302 Dependabot Updates #57: by dependabot Bot
51s main
main
51s
npm_and_yarn in /docs for astro, astro, astro, astro, astro, astro, astro, esbuild, js-yaml, postcss, sharp, svgo - Update #1521280562 Dependabot Updates #56: by dependabot Bot
52s main
main
52s