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Remove stale nf-core template remnants #414

Remove stale nf-core template remnants

Remove stale nf-core template remnants #414

Triggered via pull request April 22, 2026 13:54
Status Success
Total duration 2m 31s
Artifacts

ci.yml

on: pull_request
Check for changes
17s
Check for changes
Matrix: test
Benchmark report pytest
14s
Benchmark report pytest
Benchmark report smoke test
55s
Benchmark report smoke test
confirm-pass
4s
confirm-pass
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8 warnings
Check for changes
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/checkout@v3. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
Benchmark report pytest
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/checkout@34e114876b0b11c390a56381ad16ebd13914f8d5, actions/setup-python@v4. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
Benchmark report smoke test
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: ./setup-nextflow/subaction, actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683, actions/checkout@34e114876b0b11c390a56381ad16ebd13914f8d5, actions/setup-java@8df1039502a15bceb9433410b1a100fbe190c53b. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
tests/pipeline_api_only/main.nf.test docker NF-latest-everything
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: ./setup-nextflow/subaction, actions/cache@v3, actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683, actions/checkout@34e114876b0b11c390a56381ad16ebd13914f8d5, actions/setup-java@8df1039502a15bceb9433410b1a100fbe190c53b, actions/setup-python@v4, mikepenz/action-junit-report@v3. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
tests/pipeline_benchmark_directory/main.nf.test docker NF-latest-everything
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: ./setup-nextflow/subaction, actions/cache@v3, actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683, actions/checkout@34e114876b0b11c390a56381ad16ebd13914f8d5, actions/setup-java@8df1039502a15bceb9433410b1a100fbe190c53b, actions/setup-python@v4, mikepenz/action-junit-report@v3. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
tests/pipeline_benchmark_tarball/main.nf.test docker NF-latest-everything
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: ./setup-nextflow/subaction, actions/cache@v3, actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683, actions/checkout@34e114876b0b11c390a56381ad16ebd13914f8d5, actions/setup-java@8df1039502a15bceb9433410b1a100fbe190c53b, actions/setup-python@v4, mikepenz/action-junit-report@v3. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
tests/pipeline_mixed_no_benchmark/main.nf.test docker NF-latest-everything
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: ./setup-nextflow/subaction, actions/cache@v3, actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683, actions/checkout@34e114876b0b11c390a56381ad16ebd13914f8d5, actions/setup-java@8df1039502a15bceb9433410b1a100fbe190c53b, actions/setup-python@v4, mikepenz/action-junit-report@v3. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
tests/pipeline_benchmark_realworld_costs/main.nf.test docker NF-latest-everything
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: ./setup-nextflow/subaction, actions/cache@v3, actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683, actions/checkout@34e114876b0b11c390a56381ad16ebd13914f8d5, actions/setup-java@8df1039502a15bceb9433410b1a100fbe190c53b, actions/setup-python@v4, mikepenz/action-junit-report@v3. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/