feat: add optional platform and token_env fields to input samplesheet - #120
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FloWuenne merged 3 commits intoApr 14, 2026
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… (SE-107) Allow mixing runs from different Seqera Platform instances in a single benchmark by adding two optional columns to the input CSV: - platform: Seqera Platform API URL override (falls back to --seqera_api_endpoint) - token_env: env-var name holding the bearer token (falls back to TOWER_ACCESS_TOKEN) Both fields are fully backward-compatible. The per-row overrides are honoured in the benchmark report path (SeqeraApi.fetchRunData); the tw CLI path (SEQERA_RUNS_DUMP) still uses global config.
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Existing fetch tests mocked httpx.get but the code migrated to urllib; fix by patching urlopen instead. Add tests for alternate API endpoints, HTTP error propagation (401/500/503/URLError), and end-to-end pipeline with per-row platform/token_env metadata fields. Co-Authored-By: Claude <noreply@anthropic.com>
The default accent was updated to #065647 during the brand refresh but the test assertion still expected the old #087F68. Co-Authored-By: Claude <noreply@anthropic.com>
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Summary
Adds optional
platformandtoken_envcolumns to the input samplesheet so runs from different Seqera Platform instances can be mixed in a single nf-aggregate benchmark.Closes SE-107
Problem
nf-aggregate uses a single
--seqera_api_endpointandTOWER_ACCESS_TOKENfor all runs. This makes it impossible to benchmark runs that span multiple Platform instances (e.g. prod + staging) in a single report.Changes
assets/schema_input.jsonplatform(API URL) andtoken_env(env var name) fieldslib/SeqeraApi.groovyfetchRunDatauses per-run endpoint/token when provided, falls back to globalsworkflows/nf_aggregate/main.nfplatform/token_envin output JSON; documentSEQERA_RUNS_DUMPlimitationsubworkflows/local/utils_nf_aggregate/main.nfUsage
Both columns are optional — omitting them preserves existing behavior (
--seqera_api_endpoint+TOWER_ACCESS_TOKEN).Limitations
SeqeraApi.fetchRunData) honours per-row overridesSEQERA_RUNS_DUMP(used for MultiQC/Gantt) still uses the global endpoint/token