notebooks

Jupyter notebook demo of sequgen functionality.

Prerequisites

For running locally on Ubuntu:

sudo apt install git

Running the notebooks locally

First clone this repository.

git clone https://github.com/sequgen/notebooks.git .

Install the dependencies with

# Create a virtualenv, e.g. with
python3 -m venv env

# activate virtualenv
source env/bin/activate

# make sure to have a recent version of pip
pip install --upgrade pip wheel

# (from the repository root directory)
# install sequgen + jupyter
pip install --requirement requirements.txt

# add the new local environment to jupyter
ipython kernel install --name sequgen-demo --user

Start the notebook server:

jupyter lab

It will open a web browser with the Jupyter Lab environment, in file-browser on left side bar open the notebook (*.ipynb files) of interest. Select the kernel sequgen-demo to run the notebook.

Available notebooks

• test_mvp.ipynb: Introduction to sequgen. Start with this notebook if you are new to generating time series with sequgen
• test_five_models.ipynb: Example on how different time series can be combined in sequgen.
• gallery.ipynb: Overview of the available shapes of time series in sequgen.
• hiccup.ipynb: Case study: generate a time series for hiccups with sequgen
• bird_flapping.ipynb: Case study: recreate a time series of bird movements with sequgen
• ggir-use-case-1.ipynb: Case study: build a time series for sleep patterns with sequgen