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comprehensive FDR implementation for differential expression analysis
FDR-based visualization in volcano_de plots: support for local/tail FDR y-axes and coloring
posterior tail probability for differential expression
introduction of "is_de" boolean column in adata.var to indicate differential expression based on significance threshold
more flexible volcano_de plot with FDR/PTP-based thresholding and y-axis options
"signal" and "strength" columns in stringDB gene-set enrichment analysis
expand testing
rename fields to include comparison, e.g., "A_to_B", before statistic name
make de significance measures tail fdr, ptp, and zscore optional
implement cleanup function
bugfix: Prevent silent failure of compute_differential_abundance with sample variance
by making sure enough space is available on disk for covariance tensor.
dry run for differential expression
split tutorials in 3 parts
reduce memory demand when using batching and reflect this in dry run
fix disk space checking to respect TMPDIR environment variable consistently
include all computed results in full results dictionaries (std, fiel names, etc.)