Reproducible and Scalable Research with Snakemake and Software Containers

• Website is hosted at https://sib-swiss.github.io/containers-snakemake-training/latest/

• Please refer to issues for improvements/bugs for course material or the website

• Any contribution to this course material is highly appreciated 👍. Please have a look at the CONTRIBUTING.md file to learn more on how to contribute

Authors

• Antonin Thiébaut ORCiD
• Rafael Riudavets Puig ORCiD
• Geert van Geest ORCiD
• Patricia Palagi ORCiD

How to host the website locally?

Once you have cloned the repo, you can host it on your local browser. The website is generated with MkDocs, with the Material theme.

• Clone the repository:

   git clone https://github.com/sib-swiss/containers-snakemake-training.git

• Install MkDocs:

   pip install mkdocs

• And Material:

   pip install mkdocs-material

• Make sure you are in the repository directory and type:

   mkdocs serve

The website will be hosted on your local browser at http://localhost:8000/.

How to generate a github page?

For an automatically generated github page, you can run:

mkdocs gh-deploy