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v1.0.0

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@sigven sigven released this 25 Feb 09:39
  • Complete restructure of Python and R components. Installation now relies on two separate conda packages, pcgr (Python component) and pcgrr (R component). Direct Docker support remains, with the Dockerfile simplified to rely exclusively on the installation of the above Conda packages. Significant contributon by the great @pdiakumis
    • VCF validation step removed. Feedback from users suggested that Ensembl's vcf-validator was often too stringent so its use has been deprecated. The --no_vcf_validate option remains for backwards compatibility.
    • New documentation site (https://sigven.github.io/pcgr)
    • Data bundle updates (CIViC, ClinVar, Open Targets Platform, CancerMine, UniProt KB, Pfam)
    • CHANGELOG