singa-all release 0.3.1

Updates and features

Mathematics

• added algorithm to estimate volume of overlapping spheres (see: 10.1016/0895-7177(92)90022-D)
• added algorithm for Voronoi diagram creation that is heavily based on the javascript implementation of Raymond Hill based on the sweep line algorithm by Steven Fortune
• added Lloyd's algorithm
• added implemenation of the Kuhn–Munkres algorithm based on Kevin Sterns implemenation.

JavaFx

• added possibility to render Voronoi diagrams for graphs

Chemistry

• major refactoring, moving the structure aspects to a new module
• added possibility to parse *.mol files of structures

Structure

• new package containing classes and algorithms for structural bioinformatics
• added support for mmtf
• sped up Fit3D implementation
• added additional p-value implementation (see 10.1016/S0022-2836(03)00045-7)

Benchmark

• is now a separate project and no module

Installation

You can add all SiNGA to your project by adding the following dependency to your pom.xml.

<dependency>
    <groupId>de.bioforscher.singa</groupId>
    <artifactId>'artifact'</artifactId>
    <version>0.3.1</version>
</dependency>