Seurat walkthroughs

Code and additional notes to follow tutorials and vignettes on Seurat website. Reformatted as Quarto documents in comparison to supplied R markdowns.

Some simpler walkthroughs are written as R scripts rather than Quarto.

Tutorial sources

Inspect the subfolders labeled tutorial_1_ etc. for Github-flavored markdown reports derived from the source qmd files.

Commenced Sep 2024 (Seurat v5.1.0).

Name		Name	Last commit message	Last commit date
Latest commit History 35 Commits
R		R
renv		renv
tutorial_1_pbmc3k_guided_clustering		tutorial_1_pbmc3k_guided_clustering
tutorial_1_pbmc3k_sctransform_guided_clustering		tutorial_1_pbmc3k_sctransform_guided_clustering
tutorial_2_integration_analyses_layers_including_sctransform		tutorial_2_integration_analyses_layers_including_sctransform
.Rhistory		.Rhistory
.Rprofile		.Rprofile
.gitignore		.gitignore
README.md		README.md
Seurat_spatial_vignette_2023.Rmd		Seurat_spatial_vignette_2023.Rmd
Seurat_tutorial_1_pbmc3k.qmd		Seurat_tutorial_1_pbmc3k.qmd
Seurat_tutorial_1_pbmc3k_with_sctransform.qmd		Seurat_tutorial_1_pbmc3k_with_sctransform.qmd
Seurat_tutorial_2_pbmcsca_integrative_analysis_Seuratv5.qmd		Seurat_tutorial_2_pbmcsca_integrative_analysis_Seuratv5.qmd
Seurat_v5_sc_reference_mapping_2025-05.R		Seurat_v5_sc_reference_mapping_2025-05.R
Seurat_walkthroughs.Rproj		Seurat_walkthroughs.Rproj
renv.lock		renv.lock