Feature: Add support for separate datasets in NMF localization #3
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| name: CI | |
| on: | |
| push: | |
| branches: [ main, develop ] | |
| pull_request: | |
| branches: [ main ] | |
| release: | |
| types: [ published ] | |
| jobs: | |
| test: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| os: [ubuntu-latest, macos-latest, windows-latest] | |
| python-version: ['3.8', '3.9', '3.10', '3.11'] | |
| exclude: | |
| # Reduce matrix for faster CI | |
| - os: macos-latest | |
| python-version: '3.8' | |
| - os: windows-latest | |
| python-version: '3.8' | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install -r requirements.txt | |
| pip install -e ".[dev]" | |
| - name: Lint with flake8 | |
| run: | | |
| flake8 nmf_localizer tests --count --select=E9,F63,F7,F82 --show-source --statistics | |
| flake8 nmf_localizer tests --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics | |
| - name: Type check with mypy | |
| run: | | |
| mypy nmf_localizer --ignore-missing-imports | |
| - name: Test with pytest | |
| run: | | |
| pytest tests/ -v --cov=nmf_localizer --cov-report=xml --cov-report=html | |
| - name: Upload coverage to Codecov | |
| if: matrix.os == 'ubuntu-latest' && matrix.python-version == '3.9' | |
| uses: codecov/codecov-action@v3 | |
| with: | |
| file: ./coverage.xml | |
| flags: unittests | |
| name: codecov-umbrella | |
| build-and-publish: | |
| needs: test | |
| runs-on: ubuntu-latest | |
| if: github.event_name == 'release' && github.event.action == 'published' | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: '3.9' | |
| - name: Install build dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install build twine | |
| - name: Build package | |
| run: python -m build | |
| - name: Check package | |
| run: twine check dist/* | |
| - name: Publish to PyPI | |
| env: | |
| TWINE_USERNAME: __token__ | |
| TWINE_PASSWORD: ${{ secrets.PYPI_API_TOKEN }} | |
| run: twine upload dist/* |