Search results

Kraken database

Status: Open.

#23 In skchronicles/RNA-seek;

· tovahmarkowitz opened on Nov 15, 2021

build to accept gz files

enhancementNew feature or requestNew feature or request

rna buildrna-build related taskrna-build related task

Status: Open.

#19 In skchronicles/RNA-seek;

· kopardev opened on Mar 25, 2021

s3 location for common genome+annotation combinations

enhancementNew feature or requestNew feature or request

rna buildrna-build related taskrna-build related task

Status: Open.

#18 In skchronicles/RNA-seek;

· kopardev opened on Mar 25, 2021

Possible Race Condition with s3 Remote files

bugSomething isn't workingSomething isn't working

Status: Open.

#13 In skchronicles/RNA-seek;

· skchronicles opened on Jan 15, 2021

Docker image for main entry point RNA-seek

enhancementNew feature or requestNew feature or request

rna buildrna-build related taskrna-build related task

rna runrna-seek run related taskrna-seek run related task

Status: Open.

#12 In skchronicles/RNA-seek;

· skchronicles opened on Jan 14, 2021

AWS execution via Tibanna

enhancementNew feature or requestNew feature or request

rna runrna-seek run related taskrna-seek run related task

Status: Open.

#11 In skchronicles/RNA-seek;

· skchronicles opened on Jan 14, 2021

Download Inputs from SRA

enhancementNew feature or requestNew feature or request

rna runrna-seek run related taskrna-seek run related task

Status: Open.

#9 In skchronicles/RNA-seek;

· skchronicles opened on Jan 14, 2021

GATK4 RNA-seq short variant discovery (SNPs + Indels)

enhancementNew feature or requestNew feature or request

rna runrna-seek run related taskrna-seek run related task

Status: Open.

#7 In skchronicles/RNA-seek;

· skchronicles opened on Jan 14, 2021

rMATS

enhancementNew feature or requestNew feature or request

rna runrna-seek run related taskrna-seek run related task

Status: Open.

#6 In skchronicles/RNA-seek;

· skchronicles opened on Dec 10, 2020

Small curated input dataset for continuous integration github actions workflow

ciGithub actions or CI related taskGithub actions or CI related task

enhancementNew feature or requestNew feature or request

Status: Open.

#3 In skchronicles/RNA-seek;

· kopardev opened on Nov 7, 2020

Using s3 bucket for resources

enhancementNew feature or requestNew feature or request

rna runrna-seek run related taskrna-seek run related task

Status: Open.

#2 In skchronicles/RNA-seek;

· kopardev opened on Nov 5, 2020