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Pull requests: smith-chem-wisc/mzLib

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Pull requests list

Fixed bug in .raw file reader where dynamic connections weren't re-used bug ready for review
#1133 opened Aug 5, 2026 by Alexander-Sol Contributor Loading…
5
Add Reviewed.all so a complete proteome can be downloaded
#1132 opened Aug 5, 2026 by trishorts Contributor Loading…
1
Refactor to separate out chronologer
#1131 opened Aug 4, 2026 by Alexander-Sol Contributor Loading…
9
fix(flashlfq): bound each peak window to one charge state
#1130 opened Aug 3, 2026 by trishorts Contributor Loading…
Label protein quant columns by sample when an experimental design exists (#1128)
#1129 opened Aug 3, 2026 by trishorts Contributor Loading…
1
1
fix(flashlfq): write PEP scratch model to a temp dir, not the input folder
#1125 opened Aug 3, 2026 by trishorts Contributor Loading…
1
1
[WIP] Top down simulator
#1123 opened Jul 31, 2026 by Alexander-Sol Contributor Loading…
feat(flashlfq): export the raw MS1 peaks around each quantified peak
#1122 opened Jul 31, 2026 by Alexander-Sol Contributor Loading…
15
Diann reader
#1120 opened Jul 28, 2026 by Alexander-Sol Contributor Loading…
9
Opt-in: treat a cleavage-blocking modification as abolishing its cleavage site (Modification.BlocksCleavage)
#1119 opened Jul 24, 2026 by trishorts Contributor Loading…
6
Return the full PRIDE manifest when pageSize exceeds the server cap bug ready for review
#1102 opened Jul 23, 2026 by trishorts Contributor Loading…
4
Add isotopically-unresolved (average-mass) envelope support Maintenance The user isn't impacted by it, it's purely behind the scenes
#1081 opened Jun 29, 2026 by trishorts Contributor • Draft
1
Add MslDbBuilder: FASTA→.msl spectral-library builder for ManySearchTask
#1076 opened Jun 15, 2026 by trishorts Contributor Loading…
1
Move MS:1000516 ChargeArray onto MzSpectrum where the peaks live (supersedes #1062)
#1063 opened May 12, 2026 by pcarvalho75 Contributor Loading…
2
Real OpenMS FLASHDeconv using exe from provided installation path New Feature ready for review
#1045 opened Apr 9, 2026 by trishorts Contributor Loading…
18
Fd
#1042 opened Apr 8, 2026 by trishorts Contributor Loading…
1
Readers: FDRBench files New Feature
#1039 opened Mar 26, 2026 by nbollis Member Loading…
1
Professor lupin
#1038 opened Mar 25, 2026 by trishorts Contributor Loading…
8
Dia
#1027 opened Feb 25, 2026 by trishorts Contributor Loading…
1
Intenenal ions squared
#1022 opened Feb 20, 2026 by trishorts Contributor Loading…
1
Simple quant writer2 WIP
#1001 opened Dec 18, 2025 by trishorts Contributor Loading…
1
Quant Project (WIP)
#1000 opened Dec 18, 2025 by Alexander-Sol Contributor Loading…
4
Quant interfaces
#985 opened Dec 3, 2025 by Alexander-Sol Contributor Loading…
5
isobaric quant engine and results
#984 opened Dec 1, 2025 by trishorts Contributor Loading…
1
Update Handling of Sequence Variants (Part 8): Point LoadRnaXML to new VariantApplicationMethod ready for review
#972 opened Oct 26, 2025 by trishorts Contributor Loading…
1
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