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Update ConstructNetwork.R #390

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Update ConstructNetwork.R #390

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4 changes: 3 additions & 1 deletion R/ConstructNetwork.R
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Original file line number Diff line number Diff line change
Expand Up @@ -164,7 +164,9 @@ ConstructNetwork <- function(
seurat_obj <- SetWGCNAParams(seurat_obj, params, wgcna_name)

# append working directory to the TOM file so it has the full path:
net$TOMFiles <- paste0(getwd(), '/', renamed)
net$TOMFiles <- ifelse(test = substr(renamed,1,1) == "/",
yes = renamed,
no = paste0(getwd(), '/', renamed))

# add network to seurat obj
seurat_obj <- SetNetworkData(seurat_obj, net, wgcna_name)
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