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Snakemake

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  1. snakemake snakemake Public

    This is the development home of the workflow management system Snakemake. For general information, see

    Python 2.5k 592

  2. snakemake-wrappers snakemake-wrappers Public

    This is the development home of the Snakemake wrapper repository, see

    Python 221 191

  3. snakefmt snakefmt Public

    The uncompromising Snakemake code formatter

    Python 164 30

  4. snakemake-github-action snakemake-github-action Public

    A Github action for running a Snakemake workflow

    58 14

  5. snakemake-workflow-catalog snakemake-workflow-catalog Public

    A statically generated catalog of available Snakemake workflows

    Python 32 10

  6. snakemake-executor-plugin-slurm snakemake-executor-plugin-slurm Public

    A Snakemake executor plugin for submitting jobs to a SLURM cluster

    Python 31 24

Repositories

Showing 10 of 61 repositories
  • snakemake-workflow-catalog Public

    A statically generated catalog of available Snakemake workflows

    snakemake/snakemake-workflow-catalog’s past year of commit activity
    Python 32 MIT 10 3 0 Updated Apr 21, 2025
  • snakemake Public

    This is the development home of the workflow management system Snakemake. For general information, see

    snakemake/snakemake’s past year of commit activity
    Python 2,453 MIT 592 1,101 (1 issue needs help) 95 Updated Apr 21, 2025
  • snakemake-lang-vscode-plugin Public

    Language support and snippets for Snakemake workflows (Snakefile, *.smk) for Visual Studio Code and Apache Theia.

    snakemake/snakemake-lang-vscode-plugin’s past year of commit activity
    Python 16 MIT 16 10 3 Updated Apr 21, 2025
  • snakemake-wrappers Public

    This is the development home of the Snakemake wrapper repository, see

    snakemake/snakemake-wrappers’s past year of commit activity
    Python 221 191 22 30 Updated Apr 18, 2025
  • snakemake-executor-plugin-slurm Public

    A Snakemake executor plugin for submitting jobs to a SLURM cluster

    snakemake/snakemake-executor-plugin-slurm’s past year of commit activity
    Python 31 MIT 24 33 6 Updated Apr 11, 2025
  • snakemake-executor-plugin-kubernetes Public

    A snakemake executor plugin for submission of jobs to Kubernetes

    snakemake/snakemake-executor-plugin-kubernetes’s past year of commit activity
    Python 3 MIT 9 3 6 Updated Apr 11, 2025
  • snakemake-image-kubeflow Public

    A Snakemake image for kubeflow

    snakemake/snakemake-image-kubeflow’s past year of commit activity
    Python 1 0 0 1 Updated Apr 11, 2025
  • mastodon-release-post-action Public

    GitHub action to facilitate posting release notes on Mastodon

    snakemake/mastodon-release-post-action’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Apr 10, 2025
  • snakemake-executor-plugin-googlebatch Public

    Snakemake executor plugin for Google Batch

    snakemake/snakemake-executor-plugin-googlebatch’s past year of commit activity
    Python 4 MIT 6 10 3 Updated Apr 8, 2025
  • poetry-snakemake-plugin Public

    Plugin for poetry that adds snakemake specific functionality

    snakemake/poetry-snakemake-plugin’s past year of commit activity
    Python 5 1 0 1 Updated Apr 8, 2025
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