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Snakemake

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  1. snakemake snakemake Public

    This is the development home of the workflow management system Snakemake. For general information, see

    Python 2.4k 587

  2. snakemake-wrappers snakemake-wrappers Public

    This is the development home of the Snakemake wrapper repository, see

    Python 219 191

  3. snakefmt snakefmt Public

    The uncompromising Snakemake code formatter

    Python 162 30

  4. snakemake-github-action snakemake-github-action Public

    A Github action for running a Snakemake workflow

    58 12

  5. snakemake-workflow-catalog snakemake-workflow-catalog Public

    A statically generated catalog of available Snakemake workflows

    Python 32 10

  6. snakemake-executor-plugin-slurm snakemake-executor-plugin-slurm Public

    A Snakemake executor plugin for submitting jobs to a SLURM cluster

    Python 31 24

Repositories

Showing 10 of 59 repositories
  • snakemake Public

    This is the development home of the workflow management system Snakemake. For general information, see

    snakemake/snakemake’s past year of commit activity
    Python 2,435 MIT 587 1,094 (1 issue needs help) 89 Updated Mar 30, 2025
  • snakefmt Public

    The uncompromising Snakemake code formatter

    snakemake/snakefmt’s past year of commit activity
    Python 162 MIT 30 16 1 Updated Mar 28, 2025
  • snakemake-executor-plugin-slurm Public

    A Snakemake executor plugin for submitting jobs to a SLURM cluster

    snakemake/snakemake-executor-plugin-slurm’s past year of commit activity
    Python 31 MIT 24 32 7 Updated Mar 28, 2025
  • snakemake-software-deployment-plugin-conda Public

    A Snakemake software deployment plugin for using conda packages. Implemented using py-rattler.

    snakemake/snakemake-software-deployment-plugin-conda’s past year of commit activity
    Python 0 0 1 2 Updated Mar 28, 2025
  • snakemake-wrappers Public

    This is the development home of the Snakemake wrapper repository, see

    snakemake/snakemake-wrappers’s past year of commit activity
    Python 219 191 22 30 Updated Mar 28, 2025
  • snakemake-interface-common Public

    Common functions and classes for Snakemake and its plugins

    snakemake/snakemake-interface-common’s past year of commit activity
    Python 0 MIT 4 1 2 Updated Mar 27, 2025
  • snakemake-interface-executor-plugins Public

    This package provides a stable interface for interactions between Snakemake and its executor plugins.

    snakemake/snakemake-interface-executor-plugins’s past year of commit activity
    Python 10 MIT 12 8 1 Updated Mar 27, 2025
  • snakemake-storage-plugin-fs Public

    A Snakemake storage plugin that reads and writes from a locally mounted filesystem using rsync.

    snakemake/snakemake-storage-plugin-fs’s past year of commit activity
    Python 2 MIT 4 5 1 Updated Mar 27, 2025
  • snakemake-executor-plugin-ssh Public

    An experimental Snakemake remote executor plugin that only requires ssh

    snakemake/snakemake-executor-plugin-ssh’s past year of commit activity
    Python 1 0 0 0 Updated Mar 26, 2025
  • poetry-snakemake-plugin Public

    Plugin for poetry that adds snakemake specific functionality

    snakemake/poetry-snakemake-plugin’s past year of commit activity
    Python 5 1 0 0 Updated Mar 26, 2025
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