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Replace output file parameter checks with json schema

Status: Open.

#17 In snakemake-workflows/rad-seq-stacks;

· HenningTimm opened on May 28, 2019

Optimize plot_kmer_mapping

Status: Open.

#16 In snakemake-workflows/rad-seq-stacks;

· johanneskoester opened on May 28, 2019

Remove reads classified (as contamination) by kraken before starting stacks.

Status: Open.

#15 In snakemake-workflows/rad-seq-stacks;

· johanneskoester opened on May 28, 2019

Make use of replicates

low priority

Status: Open.

#14 In snakemake-workflows/rad-seq-stacks;

· johanneskoester opened on May 28, 2019

Check and document the amount of filtering that is applied by default by the stacks populations command

Status: Open.

#13 In snakemake-workflows/rad-seq-stacks;

· johanneskoester opened on May 28, 2019

QC: plot of pairwise locus distances

Status: Open.

#12 In snakemake-workflows/rad-seq-stacks;

· johanneskoester opened on May 28, 2019

Replacement of populations step with BWA+Varlociraptor

Status: Open.

#11 In snakemake-workflows/rad-seq-stacks;

· johanneskoester opened on May 28, 2019

Reduce report file size

Status: Open.

#8 In snakemake-workflows/rad-seq-stacks;

· johanneskoester opened on May 23, 2019