v2.5.0

2.5.0 (2025-12-09)

Features

• add ensembl reference download (#135) (8992868)
• add pca (#143) (bd2ceb4)
• adding start and end messages (#139) (1f8fc48)
• enabling caching for reference download rules (#147) (63cee48)
• Implement DESeq2 in R instead of pyDESeq2 (#138) (841cead)
• new cluster profile (#146) (4cdfef0)
• rename transcript ids to gene names (#141) (f3e643f)

Bug Fixes

• changed batch_effect to batch in samples.csv to match config schema (#136) (b20a652)
• profiles dir conformance (#140) (932a899)

v2.4.2

2.4.2 (2025-09-10)

Bug Fixes

• dealing with whitespace in transcriptome ids (#133) (582ea7d)

v2.4.1

2.4.1 (2025-09-08)

Bug Fixes

• runtime est. for flair diffexp rule (#131) (16f2206)

v2.4.0

2.4.0 (2025-09-01)

Features

• add temp marks to intermediary outputs (#128) (c61453c)

v2.3.0

2.3.0 (2025-08-01)

Features

• autotomated protein annotation (#115) (3770dff)

v2.2.1

2.2.1 (2025-06-12)

Bug Fixes

• resources and config (#117) (508c5bb)

v2.2.0

2.2.0 (2025-06-05)

Features

• dynamic resources (#114) (b6db820)

v2.1.0

2.1.0 (2025-04-30)

Features

• dynamic resource allocation (#112) (3570e36)

v2.0.1

2.0.1 (2025-03-26)

Bug Fixes

• removed subdir from rule to prohibit incorrect wildcard resolution (#108) (e79bebf)

v2.0.0

2.0.0 (2025-02-28)

⚠ BREAKING CHANGES

• isoform analysis (#99)

Features

• isoform analysis (#99) (7509cc6)