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Description
Software Versions
Snakemake 9.1.3
snakemake-executor-plugin-slurm 1.1.0
Describe the bug
This works
default-resources:
gres: "'gpu:1'"
but with gres
set in a rule, in the same profile file
set-resources:
"some_rule":
...
gres: "'gpu:1'"
following error appears
WorkflowError:
Invalid GRES format: 'gpu:1'. Expected format: '<name>:<number>' or '<name>:<type>:<number>' (e.g., 'gpu:1' or 'gpu:tesla:2')
Aside from failing submission, the message suggests to use format that is already used.
More details in case parameters interfere with each other
default-resources:
tasks: 1
threads: 12
cpus_per_task: 12
runtime: 5
slurm_partition: "deflt"
gres: "'gpu:1'"
slurm_extra: "'--exclude node5'"
set-resources:
"failing_rule":
runtime: 30240
slurm_partition: "long"
nodes: 1
tasks: 4
mpi: "srun"
gres: "'gpu:4'"
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