Merge branch 'master' into aria2c

Author: fgvieira

bio/bustools/count/environment.linux-64.pin.txt

@@ -1,30 +1,30 @@
 # This file may be used to create an environment using:
 # $ conda create --name <env> --file <this file>
 # platform: linux-64
+# created-by: conda 24.9.2
 @EXPLICIT
 https://conda.anaconda.org/conda-forge/linux-64/_libgcc_mutex-0.1-conda_forge.tar.bz2#d7c89558ba9fa0495403155b64376d81
-https://conda.anaconda.org/conda-forge/linux-64/ca-certificates-2024.8.30-hbcca054_0.conda#c27d1c142233b5bc9ca570c6e2e0c244
-https://conda.anaconda.org/conda-forge/linux-64/libgomp-14.2.0-h77fa898_1.conda#cc3573974587f12dda90d96e3e55a702
+https://conda.anaconda.org/conda-forge/noarch/ca-certificates-2025.1.31-hbd8a1cb_1.conda#e74273d9fc5ab633d613cde474b55157
+https://conda.anaconda.org/conda-forge/linux-64/libgomp-14.2.0-h767d61c_2.conda#06d02030237f4d5b3d9a7e7d348fe3c6
 https://conda.anaconda.org/conda-forge/linux-64/_openmp_mutex-4.5-2_gnu.tar.bz2#73aaf86a425cc6e73fcf236a5a46396d
-https://conda.anaconda.org/conda-forge/linux-64/libgcc-14.2.0-h77fa898_1.conda#3cb76c3f10d3bc7f1105b2fc9db984df
-https://conda.anaconda.org/conda-forge/linux-64/c-ares-1.34.2-heb4867d_0.conda#2b780c0338fc0ffa678ac82c54af51fd
-https://conda.anaconda.org/conda-forge/linux-64/libgcc-ng-14.2.0-h69a702a_1.conda#e39480b9ca41323497b05492a63bc35b
-https://conda.anaconda.org/conda-forge/linux-64/libgfortran5-14.2.0-hd5240d6_1.conda#9822b874ea29af082e5d36098d25427d
-https://conda.anaconda.org/conda-forge/linux-64/libstdcxx-14.2.0-hc0a3c3a_1.conda#234a5554c53625688d51062645337328
+https://conda.anaconda.org/conda-forge/linux-64/libgcc-14.2.0-h767d61c_2.conda#ef504d1acbd74b7cc6849ef8af47dd03
+https://conda.anaconda.org/conda-forge/linux-64/c-ares-1.34.5-hb9d3cd8_0.conda#f7f0d6cc2dc986d42ac2689ec88192be
+https://conda.anaconda.org/conda-forge/linux-64/libgcc-ng-14.2.0-h69a702a_2.conda#a2222a6ada71fb478682efe483ce0f92
+https://conda.anaconda.org/conda-forge/linux-64/libgfortran5-14.2.0-hf1ad2bd_2.conda#556a4fdfac7287d349b8f09aba899693
+https://conda.anaconda.org/conda-forge/linux-64/libstdcxx-14.2.0-h8f9b012_2.conda#a78c856b6dc6bf4ea8daeb9beaaa3fb0
 https://conda.anaconda.org/conda-forge/linux-64/libzlib-1.3.1-hb9d3cd8_2.conda#edb0dca6bc32e4f4789199455a1dbeb8
-https://conda.anaconda.org/conda-forge/linux-64/openssl-3.3.2-hb9d3cd8_0.conda#4d638782050ab6faa27275bed57e9b4e
+https://conda.anaconda.org/conda-forge/linux-64/ncurses-6.5-h2d0b736_3.conda#47e340acb35de30501a76c7c799c41d7
+https://conda.anaconda.org/conda-forge/linux-64/openssl-3.5.0-h7b32b05_0.conda#bb539841f2a3fde210f387d00ed4bb9d
 https://conda.anaconda.org/conda-forge/linux-64/keyutils-1.6.1-h166bdaf_0.tar.bz2#30186d27e2c9fa62b45fb1476b7200e3
+https://conda.anaconda.org/conda-forge/linux-64/libedit-3.1.20250104-pl5321h7949ede_0.conda#c277e0a4d549b03ac1e9d6cbbe3d017b
 https://conda.anaconda.org/conda-forge/linux-64/libev-4.33-hd590300_2.conda#172bf1cd1ff8629f2b1179945ed45055
-https://conda.anaconda.org/conda-forge/linux-64/libgfortran-14.2.0-h69a702a_1.conda#f1fd30127802683586f768875127a987
-https://conda.anaconda.org/conda-forge/linux-64/libssh2-1.11.0-h0841786_0.conda#1f5a58e686b13bcfde88b93f547d23fe
-https://conda.anaconda.org/conda-forge/linux-64/libstdcxx-ng-14.2.0-h4852527_1.conda#8371ac6457591af2cf6159439c1fd051
-https://conda.anaconda.org/conda-forge/linux-64/ncurses-6.5-he02047a_1.conda#70caf8bb6cf39a0b6b7efc885f51c0fe
+https://conda.anaconda.org/conda-forge/linux-64/libgfortran-14.2.0-h69a702a_2.conda#fb54c4ea68b460c278d26eea89cfbcc3
+https://conda.anaconda.org/conda-forge/linux-64/libssh2-1.11.1-hf672d98_0.conda#be2de152d8073ef1c01b7728475f2fe7
+https://conda.anaconda.org/conda-forge/linux-64/libstdcxx-ng-14.2.0-h4852527_2.conda#c75da67f045c2627f59e6fcb5f4e3a9b
+https://conda.anaconda.org/conda-forge/linux-64/zstd-1.5.7-hb8e6e7a_2.conda#6432cb5d4ac0046c3ac0a8a0f95842f9
+https://conda.anaconda.org/conda-forge/linux-64/krb5-1.21.3-h659f571_0.conda#3f43953b7d3fb3aaa1d0d0723d91e368
 https://conda.anaconda.org/conda-forge/linux-64/libaec-1.1.3-h59595ed_0.conda#5e97e271911b8b2001a8b71860c32faa
-https://conda.anaconda.org/conda-forge/linux-64/libedit-3.1.20191231-he28a2e2_2.tar.bz2#4d331e44109e3f0e19b4cb8f9b82f3e1
-https://conda.anaconda.org/conda-forge/linux-64/libgfortran-ng-14.2.0-h69a702a_1.conda#0a7f4cd238267c88e5d69f7826a407eb
 https://conda.anaconda.org/conda-forge/linux-64/libnghttp2-1.64.0-h161d5f1_0.conda#19e57602824042dfd0446292ef90488b
-https://conda.anaconda.org/conda-forge/linux-64/zstd-1.5.6-ha6fb4c9_0.conda#4d056880988120e29d75bfff282e0f45
-https://conda.anaconda.org/conda-forge/linux-64/krb5-1.21.3-h659f571_0.conda#3f43953b7d3fb3aaa1d0d0723d91e368
-https://conda.anaconda.org/conda-forge/linux-64/libcurl-8.10.1-hbbe4b11_0.conda#6e801c50a40301f6978c53976917b277
-https://conda.anaconda.org/conda-forge/linux-64/hdf5-1.14.3-nompi_hdf9ad27_105.conda#7e1729554e209627636a0f6fabcdd115
-https://conda.anaconda.org/bioconda/linux-64/bustools-0.44.1-he1fd2f9_0.tar.bz2#573b917c5041df819d1ad224d56132e2
+https://conda.anaconda.org/conda-forge/linux-64/libcurl-8.13.0-h332b0f4_0.conda#cbdc92ac0d93fe3c796e36ad65c7905c
+https://conda.anaconda.org/conda-forge/linux-64/hdf5-1.14.3-nompi_h2d575fe_109.conda#e7a7a6e6f70553a31e6e79c65768d089
+https://conda.anaconda.org/bioconda/linux-64/bustools-0.45.0-h6f0a7f7_0.tar.bz2#8612439418f1dececd07b812a630ebd2

bio/bustools/count/environment.yaml

@@ -3,4 +3,4 @@ channels:
   - bioconda
   - nodefaults
 dependencies:
-  - bustools =0.44.1
+  - bustools =0.45.0

bio/bustools/sort/environment.linux-64.pin.txt

@@ -4,23 +4,23 @@
 # created-by: conda 24.9.2
 @EXPLICIT
 https://conda.anaconda.org/conda-forge/linux-64/_libgcc_mutex-0.1-conda_forge.tar.bz2#d7c89558ba9fa0495403155b64376d81
-https://conda.anaconda.org/conda-forge/linux-64/ca-certificates-2025.1.31-hbcca054_0.conda#19f3a56f68d2fd06c516076bff482c52
+https://conda.anaconda.org/conda-forge/noarch/ca-certificates-2025.1.31-hbd8a1cb_1.conda#e74273d9fc5ab633d613cde474b55157
 https://conda.anaconda.org/conda-forge/linux-64/ld_impl_linux-64-2.43-h712a8e2_4.conda#01f8d123c96816249efd255a31ad7712
 https://conda.anaconda.org/conda-forge/linux-64/libgomp-14.2.0-h767d61c_2.conda#06d02030237f4d5b3d9a7e7d348fe3c6
-https://conda.anaconda.org/conda-forge/linux-64/python_abi-3.13-5_cp313.conda#381bbd2a92c863f640a55b6ff3c35161
+https://conda.anaconda.org/conda-forge/noarch/python_abi-3.13-7_cp313.conda#e84b44e6300f1703cb25d29120c5b1d8
 https://conda.anaconda.org/conda-forge/noarch/tzdata-2025b-h78e105d_0.conda#4222072737ccff51314b5ece9c7d6f5a
 https://conda.anaconda.org/conda-forge/linux-64/_openmp_mutex-4.5-2_gnu.tar.bz2#73aaf86a425cc6e73fcf236a5a46396d
 https://conda.anaconda.org/conda-forge/linux-64/libgcc-14.2.0-h767d61c_2.conda#ef504d1acbd74b7cc6849ef8af47dd03
-https://conda.anaconda.org/conda-forge/linux-64/c-ares-1.34.4-hb9d3cd8_0.conda#e2775acf57efd5af15b8e3d1d74d72d3
-https://conda.anaconda.org/conda-forge/linux-64/libexpat-2.6.4-h5888daf_0.conda#db833e03127376d461e1e13e76f09b6c
-https://conda.anaconda.org/conda-forge/linux-64/libffi-3.4.6-h2dba641_0.conda#e3eb7806380bc8bcecba6d749ad5f026
+https://conda.anaconda.org/conda-forge/linux-64/c-ares-1.34.5-hb9d3cd8_0.conda#f7f0d6cc2dc986d42ac2689ec88192be
+https://conda.anaconda.org/conda-forge/linux-64/libexpat-2.7.0-h5888daf_0.conda#db0bfbe7dd197b68ad5f30333bae6ce0
+https://conda.anaconda.org/conda-forge/linux-64/libffi-3.4.6-h2dba641_1.conda#ede4673863426c0883c0063d853bbd85
 https://conda.anaconda.org/conda-forge/linux-64/libgcc-ng-14.2.0-h69a702a_2.conda#a2222a6ada71fb478682efe483ce0f92
 https://conda.anaconda.org/conda-forge/linux-64/libgfortran5-14.2.0-hf1ad2bd_2.conda#556a4fdfac7287d349b8f09aba899693
-https://conda.anaconda.org/conda-forge/linux-64/liblzma-5.6.4-hb9d3cd8_0.conda#42d5b6a0f30d3c10cd88cb8584fda1cb
+https://conda.anaconda.org/conda-forge/linux-64/liblzma-5.8.1-hb9d3cd8_0.conda#0e87378639676987af32fee53ba32258
 https://conda.anaconda.org/conda-forge/linux-64/libstdcxx-14.2.0-h8f9b012_2.conda#a78c856b6dc6bf4ea8daeb9beaaa3fb0
 https://conda.anaconda.org/conda-forge/linux-64/libzlib-1.3.1-hb9d3cd8_2.conda#edb0dca6bc32e4f4789199455a1dbeb8
 https://conda.anaconda.org/conda-forge/linux-64/ncurses-6.5-h2d0b736_3.conda#47e340acb35de30501a76c7c799c41d7
-https://conda.anaconda.org/conda-forge/linux-64/openssl-3.4.1-h7b32b05_0.conda#41adf927e746dc75ecf0ef841c454e48
+https://conda.anaconda.org/conda-forge/linux-64/openssl-3.5.0-h7b32b05_0.conda#bb539841f2a3fde210f387d00ed4bb9d
 https://conda.anaconda.org/conda-forge/linux-64/bzip2-1.0.8-h4bc722e_7.conda#62ee74e96c5ebb0af99386de58cf9553
 https://conda.anaconda.org/conda-forge/linux-64/keyutils-1.6.1-h166bdaf_0.tar.bz2#30186d27e2c9fa62b45fb1476b7200e3
 https://conda.anaconda.org/conda-forge/linux-64/libedit-3.1.20250104-pl5321h7949ede_0.conda#c277e0a4d549b03ac1e9d6cbbe3d017b
@@ -37,9 +37,9 @@ https://conda.anaconda.org/conda-forge/linux-64/zstd-1.5.7-hb8e6e7a_2.conda#6432
 https://conda.anaconda.org/conda-forge/linux-64/krb5-1.21.3-h659f571_0.conda#3f43953b7d3fb3aaa1d0d0723d91e368
 https://conda.anaconda.org/conda-forge/linux-64/libaec-1.1.3-h59595ed_0.conda#5e97e271911b8b2001a8b71860c32faa
 https://conda.anaconda.org/conda-forge/linux-64/libnghttp2-1.64.0-h161d5f1_0.conda#19e57602824042dfd0446292ef90488b
-https://conda.anaconda.org/conda-forge/linux-64/python-3.13.2-hf636f53_101_cp313.conda#a7902a3611fe773da3921cbbf7bc2c5c
-https://conda.anaconda.org/conda-forge/linux-64/libcurl-8.12.1-h332b0f4_0.conda#45e9dc4e7b25e2841deb392be085500e
+https://conda.anaconda.org/conda-forge/linux-64/python-3.13.3-hf636f53_101_cp313.conda#10622e12d649154af0bd76bcf33a7c5c
+https://conda.anaconda.org/conda-forge/linux-64/libcurl-8.13.0-h332b0f4_0.conda#cbdc92ac0d93fe3c796e36ad65c7905c
 https://conda.anaconda.org/conda-forge/noarch/pip-25.0.1-pyh145f28c_0.conda#9ba21d75dc722c29827988a575a65707
 https://conda.anaconda.org/bioconda/noarch/snakemake-wrapper-utils-0.7.2-pyhdfd78af_0.tar.bz2#3226d9f73c63e14968e89a5422a1f4d7
 https://conda.anaconda.org/conda-forge/linux-64/hdf5-1.14.3-nompi_h2d575fe_109.conda#e7a7a6e6f70553a31e6e79c65768d089
-https://conda.anaconda.org/bioconda/linux-64/bustools-0.44.1-h6f0a7f7_1.tar.bz2#f85d80298739411d6001d6c48eba37ce
+https://conda.anaconda.org/bioconda/linux-64/bustools-0.45.0-h6f0a7f7_0.tar.bz2#8612439418f1dececd07b812a630ebd2

bio/bustools/sort/environment.yaml

@@ -3,5 +3,5 @@ channels:
   - bioconda
   - nodefaults
 dependencies:
-  - bustools =0.44.1
+  - bustools =0.45.0
   - snakemake-wrapper-utils =0.7.2

bio/bustools/text/environment.linux-64.pin.txt

@@ -1,30 +1,30 @@
 # This file may be used to create an environment using:
 # $ conda create --name <env> --file <this file>
 # platform: linux-64
+# created-by: conda 24.9.2
 @EXPLICIT
 https://conda.anaconda.org/conda-forge/linux-64/_libgcc_mutex-0.1-conda_forge.tar.bz2#d7c89558ba9fa0495403155b64376d81
-https://conda.anaconda.org/conda-forge/linux-64/ca-certificates-2024.8.30-hbcca054_0.conda#c27d1c142233b5bc9ca570c6e2e0c244
-https://conda.anaconda.org/conda-forge/linux-64/libgomp-14.2.0-h77fa898_1.conda#cc3573974587f12dda90d96e3e55a702
+https://conda.anaconda.org/conda-forge/noarch/ca-certificates-2025.1.31-hbd8a1cb_1.conda#e74273d9fc5ab633d613cde474b55157
+https://conda.anaconda.org/conda-forge/linux-64/libgomp-14.2.0-h767d61c_2.conda#06d02030237f4d5b3d9a7e7d348fe3c6
 https://conda.anaconda.org/conda-forge/linux-64/_openmp_mutex-4.5-2_gnu.tar.bz2#73aaf86a425cc6e73fcf236a5a46396d
-https://conda.anaconda.org/conda-forge/linux-64/libgcc-14.2.0-h77fa898_1.conda#3cb76c3f10d3bc7f1105b2fc9db984df
-https://conda.anaconda.org/conda-forge/linux-64/c-ares-1.34.2-heb4867d_0.conda#2b780c0338fc0ffa678ac82c54af51fd
-https://conda.anaconda.org/conda-forge/linux-64/libgcc-ng-14.2.0-h69a702a_1.conda#e39480b9ca41323497b05492a63bc35b
-https://conda.anaconda.org/conda-forge/linux-64/libgfortran5-14.2.0-hd5240d6_1.conda#9822b874ea29af082e5d36098d25427d
-https://conda.anaconda.org/conda-forge/linux-64/libstdcxx-14.2.0-hc0a3c3a_1.conda#234a5554c53625688d51062645337328
+https://conda.anaconda.org/conda-forge/linux-64/libgcc-14.2.0-h767d61c_2.conda#ef504d1acbd74b7cc6849ef8af47dd03
+https://conda.anaconda.org/conda-forge/linux-64/c-ares-1.34.5-hb9d3cd8_0.conda#f7f0d6cc2dc986d42ac2689ec88192be
+https://conda.anaconda.org/conda-forge/linux-64/libgcc-ng-14.2.0-h69a702a_2.conda#a2222a6ada71fb478682efe483ce0f92
+https://conda.anaconda.org/conda-forge/linux-64/libgfortran5-14.2.0-hf1ad2bd_2.conda#556a4fdfac7287d349b8f09aba899693
+https://conda.anaconda.org/conda-forge/linux-64/libstdcxx-14.2.0-h8f9b012_2.conda#a78c856b6dc6bf4ea8daeb9beaaa3fb0
 https://conda.anaconda.org/conda-forge/linux-64/libzlib-1.3.1-hb9d3cd8_2.conda#edb0dca6bc32e4f4789199455a1dbeb8
-https://conda.anaconda.org/conda-forge/linux-64/openssl-3.3.2-hb9d3cd8_0.conda#4d638782050ab6faa27275bed57e9b4e
+https://conda.anaconda.org/conda-forge/linux-64/ncurses-6.5-h2d0b736_3.conda#47e340acb35de30501a76c7c799c41d7
+https://conda.anaconda.org/conda-forge/linux-64/openssl-3.5.0-h7b32b05_0.conda#bb539841f2a3fde210f387d00ed4bb9d
 https://conda.anaconda.org/conda-forge/linux-64/keyutils-1.6.1-h166bdaf_0.tar.bz2#30186d27e2c9fa62b45fb1476b7200e3
+https://conda.anaconda.org/conda-forge/linux-64/libedit-3.1.20250104-pl5321h7949ede_0.conda#c277e0a4d549b03ac1e9d6cbbe3d017b
 https://conda.anaconda.org/conda-forge/linux-64/libev-4.33-hd590300_2.conda#172bf1cd1ff8629f2b1179945ed45055
-https://conda.anaconda.org/conda-forge/linux-64/libgfortran-14.2.0-h69a702a_1.conda#f1fd30127802683586f768875127a987
-https://conda.anaconda.org/conda-forge/linux-64/libssh2-1.11.0-h0841786_0.conda#1f5a58e686b13bcfde88b93f547d23fe
-https://conda.anaconda.org/conda-forge/linux-64/libstdcxx-ng-14.2.0-h4852527_1.conda#8371ac6457591af2cf6159439c1fd051
-https://conda.anaconda.org/conda-forge/linux-64/ncurses-6.5-he02047a_1.conda#70caf8bb6cf39a0b6b7efc885f51c0fe
+https://conda.anaconda.org/conda-forge/linux-64/libgfortran-14.2.0-h69a702a_2.conda#fb54c4ea68b460c278d26eea89cfbcc3
+https://conda.anaconda.org/conda-forge/linux-64/libssh2-1.11.1-hf672d98_0.conda#be2de152d8073ef1c01b7728475f2fe7
+https://conda.anaconda.org/conda-forge/linux-64/libstdcxx-ng-14.2.0-h4852527_2.conda#c75da67f045c2627f59e6fcb5f4e3a9b
+https://conda.anaconda.org/conda-forge/linux-64/zstd-1.5.7-hb8e6e7a_2.conda#6432cb5d4ac0046c3ac0a8a0f95842f9
+https://conda.anaconda.org/conda-forge/linux-64/krb5-1.21.3-h659f571_0.conda#3f43953b7d3fb3aaa1d0d0723d91e368
 https://conda.anaconda.org/conda-forge/linux-64/libaec-1.1.3-h59595ed_0.conda#5e97e271911b8b2001a8b71860c32faa
-https://conda.anaconda.org/conda-forge/linux-64/libedit-3.1.20191231-he28a2e2_2.tar.bz2#4d331e44109e3f0e19b4cb8f9b82f3e1
-https://conda.anaconda.org/conda-forge/linux-64/libgfortran-ng-14.2.0-h69a702a_1.conda#0a7f4cd238267c88e5d69f7826a407eb
 https://conda.anaconda.org/conda-forge/linux-64/libnghttp2-1.64.0-h161d5f1_0.conda#19e57602824042dfd0446292ef90488b
-https://conda.anaconda.org/conda-forge/linux-64/zstd-1.5.6-ha6fb4c9_0.conda#4d056880988120e29d75bfff282e0f45
-https://conda.anaconda.org/conda-forge/linux-64/krb5-1.21.3-h659f571_0.conda#3f43953b7d3fb3aaa1d0d0723d91e368
-https://conda.anaconda.org/conda-forge/linux-64/libcurl-8.10.1-hbbe4b11_0.conda#6e801c50a40301f6978c53976917b277
-https://conda.anaconda.org/conda-forge/linux-64/hdf5-1.14.3-nompi_hdf9ad27_105.conda#7e1729554e209627636a0f6fabcdd115
-https://conda.anaconda.org/bioconda/linux-64/bustools-0.44.1-he1fd2f9_0.tar.bz2#573b917c5041df819d1ad224d56132e2
+https://conda.anaconda.org/conda-forge/linux-64/libcurl-8.13.0-h332b0f4_0.conda#cbdc92ac0d93fe3c796e36ad65c7905c
+https://conda.anaconda.org/conda-forge/linux-64/hdf5-1.14.3-nompi_h2d575fe_109.conda#e7a7a6e6f70553a31e6e79c65768d089
+https://conda.anaconda.org/bioconda/linux-64/bustools-0.45.0-h6f0a7f7_0.tar.bz2#8612439418f1dececd07b812a630ebd2

bio/bustools/text/environment.yaml

@@ -3,4 +3,4 @@ channels:
   - bioconda
   - nodefaults
 dependencies:
-  - bustools =0.44.1
+  - bustools =0.45.0