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Merge pull request #309 from sneumann/sneumann-patch-5 #112

Merge pull request #309 from sneumann/sneumann-patch-5

Merge pull request #309 from sneumann/sneumann-patch-5 #112

Triggered via push August 12, 2025 20:37
Status Failure
Total duration 30m 55s
Artifacts 1

check-bioc.yml

on: push
Matrix: build-check
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1 error, 30 warnings, and 3 notices
ubuntu-latest (devel)
Process completed with exit code 1.
macOS-latest (devel)
File ‘mzR/libs/mzR.so’:
macOS-latest (devel)
See below...
macOS-latest (devel)
File ‘mzR/libs/mzR.so’:
macOS-latest (devel)
Found the following significant warnings:
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.22/books/bin/macosx/big-sur-arm64/contrib/4.6:
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.22/workflows/bin/macosx/big-sur-arm64/contrib/4.6:
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.22/data/experiment/bin/macosx/big-sur-arm64/contrib/4.6:
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.22/data/annotation/bin/macosx/big-sur-arm64/contrib/4.6:
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.22/bioc/bin/macosx/big-sur-arm64/contrib/4.6:
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.22/books/bin/macosx/big-sur-arm64/contrib/4.6:
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.22/workflows/bin/macosx/big-sur-arm64/contrib/4.6:
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.22/data/experiment/bin/macosx/big-sur-arm64/contrib/4.6:
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.22/data/annotation/bin/macosx/big-sur-arm64/contrib/4.6:
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.22/bioc/bin/macosx/big-sur-arm64/contrib/4.6:
windows-latest (devel)
Non-portable flags in variable 'PKG_CPPFLAGS':
windows-latest (devel)
See below...
windows-latest (devel)
Non-portable flags in variable 'PKG_CPPFLAGS':
windows-latest (devel)
Found the following significant warnings:
windows-latest (devel)
file 'mzR/configure' did not have execute permissions: corrected
windows-latest (devel)
file 'mzR/cleanup' did not have execute permissions: corrected
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.22/books/bin/windows/contrib/4.6:
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.22/workflows/bin/windows/contrib/4.6:
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.22/data/experiment/bin/windows/contrib/4.6:
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.22/data/annotation/bin/windows/contrib/4.6:
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.22/bioc/bin/windows/contrib/4.6:
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.22/books/bin/windows/contrib/4.6:
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.22/workflows/bin/windows/contrib/4.6:
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.22/data/experiment/bin/windows/contrib/4.6:
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.22/data/annotation/bin/windows/contrib/4.6:
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.22/bioc/bin/windows/contrib/4.6:
macOS-latest (devel)
The macos-latest label will migrate to macOS 15 beginning August 4, 2025. For more information see https://github.com/actions/runner-images/issues/12520
macOS-latest (devel)
The macos-latest label will migrate to macOS 15 beginning August 4, 2025. For more information see https://github.com/actions/runner-images/issues/12520
windows-latest (devel)
The windows-latest label will migrate from Windows Server 2022 to Windows Server 2025 beginning September 2, 2025. For more information see https://github.com/actions/runner-images/issues/12677

Artifacts

Produced during runtime
Name Size Digest
Linux-biocversion-devel-r-devel-results Expired
156 MB
sha256:ff88043f11b5faa8dbf27063a64e6eae1a3bab403c5ebdd1a4ac4cf91927f30c