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Merge pull request #1 from jorainer/adafede #124

Merge pull request #1 from jorainer/adafede

Merge pull request #1 from jorainer/adafede #124

Triggered via push September 3, 2025 12:30
Status Failure
Total duration 31m 36s
Artifacts 1

check-bioc.yml

on: push
Matrix: build-check
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1 error, 40 warnings, and 1 notice
ubuntu-latest (devel)
Process completed with exit code 1.
macOS-latest (devel)
File ‘mzR/libs/mzR.so’:
macOS-latest (devel)
See below...
macOS-latest (devel)
File ‘mzR/libs/mzR.so’:
macOS-latest (devel)
Found the following significant warnings:
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.22/books/bin/macosx/big-sur-arm64/contrib/4.6:
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.22/workflows/bin/macosx/big-sur-arm64/contrib/4.6:
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.22/data/experiment/bin/macosx/big-sur-arm64/contrib/4.6:
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.22/data/annotation/bin/macosx/big-sur-arm64/contrib/4.6:
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.22/bioc/bin/macosx/big-sur-arm64/contrib/4.6:
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.22/books/bin/macosx/big-sur-arm64/contrib/4.6:
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.22/workflows/bin/macosx/big-sur-arm64/contrib/4.6:
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.22/data/experiment/bin/macosx/big-sur-arm64/contrib/4.6:
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.22/data/annotation/bin/macosx/big-sur-arm64/contrib/4.6:
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.22/bioc/bin/macosx/big-sur-arm64/contrib/4.6:
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.22/books/bin/macosx/big-sur-arm64/contrib/4.6:
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.22/workflows/bin/macosx/big-sur-arm64/contrib/4.6:
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.22/data/experiment/bin/macosx/big-sur-arm64/contrib/4.6:
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.22/data/annotation/bin/macosx/big-sur-arm64/contrib/4.6:
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.22/bioc/bin/macosx/big-sur-arm64/contrib/4.6:
windows-latest (devel)
Non-portable flags in variable 'PKG_CPPFLAGS':
windows-latest (devel)
See below...
windows-latest (devel)
Non-portable flags in variable 'PKG_CPPFLAGS':
windows-latest (devel)
Found the following significant warnings:
windows-latest (devel)
file 'mzR/configure' did not have execute permissions: corrected
windows-latest (devel)
file 'mzR/cleanup' did not have execute permissions: corrected
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.22/books/bin/windows/contrib/4.6:
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.22/workflows/bin/windows/contrib/4.6:
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.22/data/experiment/bin/windows/contrib/4.6:
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.22/data/annotation/bin/windows/contrib/4.6:
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.22/bioc/bin/windows/contrib/4.6:
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.22/books/bin/windows/contrib/4.6:
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.22/workflows/bin/windows/contrib/4.6:
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.22/data/experiment/bin/windows/contrib/4.6:
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.22/data/annotation/bin/windows/contrib/4.6:
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.22/bioc/bin/windows/contrib/4.6:
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.22/books/bin/windows/contrib/4.6:
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.22/workflows/bin/windows/contrib/4.6:
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.22/data/experiment/bin/windows/contrib/4.6:
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.22/data/annotation/bin/windows/contrib/4.6:
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.22/bioc/bin/windows/contrib/4.6:
windows-latest (devel)
The windows-latest label will migrate from Windows Server 2022 to Windows Server 2025 beginning September 2, 2025. For more information see https://github.com/actions/runner-images/issues/12677

Artifacts

Produced during runtime
Name Size Digest
Linux-biocversion-devel-r-devel-results Expired
156 MB
sha256:97f1a4977d4d68231fef53cad6e0e996ff702686b0571435fe29f434e7dc3286