CoCo

CoCo is a software suite for different Consensus Correction applications using spaced k-mer count profiles of short reads or contigs. CoCo is open source GPL-licensed software implemented in C++.

Compile from source

To compile CoCo git, a C++/11 capable compiler (e.g. gcc 4.7+, clang 3.5+) and cmake (3.10 or higher) are required. Afterwards, the CoCo binary will be located in the build/ directory.

  git clone https://github.com/soedinglab/CoCo.git
  cd CoCo
  git submodule update --init
  mkdir build && cd build
  cmake -DCMAKE_BUILD_TYPE=RELEASE -DCMAKE_INSTALL_PREFIX=. ..
  make -j 4