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Adding STNeuroNet to the niftynet pipeline
soltanianzadeh edited this page Mar 29, 2019
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In the provided Software/STNeuroNet folder, a number of python codes for our network is provided. These files need to be placed in the correct locations under the niftynet package. Assuming that the niftynet package directory is (for example, C:/Program Files/Anaconda3/env/stneuronet/Lib/site-packages/niftynet for Windows when the environment stneuronet was created), each file should be placed in the locations listed below:
| File | Destination Folder |
|---|---|
| application_driver.py | <niftynetroot>/engine |
| application_factory.py | <niftynetroot>/engine |
| windows_aggregator_grid.py | <niftynetroot>/engine |
| pad.py | <niftynetroot>/layer |
| grid_warper.py | <niftynetroot>/layer |
| stneuronet.py | <niftynetroot>/network |
| segmentation_application.py | <niftynetroot>/application |