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@som-shahlab

Dr. Nigam Shah's research group at Stanford Medicine

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  1. medalign medalign Public

    MedAlign is a clinician-generated dataset for instruction following with electronic medical records.

    98 9

  2. ehrshot-benchmark ehrshot-benchmark Public

    A benchmark for few-shot evaluation of foundation models for electronic health records (EHRs)

    Jupyter Notebook 211 29

  3. femr femr Public

    FEMR (Framework for Electronic Medical Records) provides tooling for large-scale, self-supervised learning using electronic health records

    Python 164 31

  4. meds_reader meds_reader Public

    A high-performance database and Python reader interface for MEDS datasets

    C++ 20 1

Repositories

Showing 10 of 58 repositories
  • femr Public

    FEMR (Framework for Electronic Medical Records) provides tooling for large-scale, self-supervised learning using electronic health records

    som-shahlab/femr’s past year of commit activity
    Python 164 Apache-2.0 31 6 3 Updated Mar 2, 2026
  • medhelm Public
    som-shahlab/medhelm’s past year of commit activity
    Python 2 0 1 3 Updated Feb 23, 2026
  • medalign-website Public

    Landing page and website for the MedAlign project

    som-shahlab/medalign-website’s past year of commit activity
    HTML 0 MIT 2 0 2 Updated Feb 9, 2026
  • meds_reader Public

    A high-performance database and Python reader interface for MEDS datasets

    som-shahlab/meds_reader’s past year of commit activity
    C++ 20 Apache-2.0 1 0 0 Updated Jan 26, 2026
  • factehr-website Public

    Website for FactEHR: A Dataset for Evaluating Factuality in Clinical Notes Using LLMs

    som-shahlab/factehr-website’s past year of commit activity
    HTML 0 0 0 0 Updated Dec 22, 2025
  • factehr Public

    Fact Verification for Clinical Notes with LLMs

    som-shahlab/factehr’s past year of commit activity
    Python 39 2 0 0 Updated Dec 22, 2025
  • hf_ehr Public

    Training HuggingFace models on EHR data

    som-shahlab/hf_ehr’s past year of commit activity
    Jupyter Notebook 41 Apache-2.0 11 4 0 Updated Nov 2, 2025
  • aplusml Public

    APLUS ML = A Python Library for Usefulness Simulations of Machine Learning models

    som-shahlab/aplusml’s past year of commit activity
    Jupyter Notebook 26 Apache-2.0 5 4 0 Updated Oct 16, 2025
  • mimic_tutorial Public
    som-shahlab/mimic_tutorial’s past year of commit activity
    Python 4 0 0 0 Updated Jul 7, 2025
  • inspect-website Public
    som-shahlab/inspect-website’s past year of commit activity
    SCSS 0 MIT 0 0 0 Updated Jul 4, 2025
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