Skip to content

Ontology featurization should support OMOP only #212

@EthanSteinberg

Description

@EthanSteinberg

Right now FEMR supports ontology expansion in both tabular and neural network featurization (https://github.com/som-shahlab/femr/blob/main/src/femr/featurizers/featurizers.py#L178 for tabular featurization and "hierarchical" for neural network featurization).

It would be useful to enforce additional variants here in some fashion.

In particular, we want to enforce a strict vocabulary here (OMOP only ideally).

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Type

    No type

    Projects

    No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions