This is the paper repository for "Exploring neighborhoods in large metagenome assembly graphs reveals hidden sequence diversity.", Brown et al., 2018.
The paper is in paper/; use make to build the main.pdf file.
Figure generation code is in paper/figures/ along with supporting
pipeline output.
The base pipeline for generating the primary sequence output files is in
pipeline-base/. See the README for more info.
The remaining analysis pipelines are under pipeline-analyses/. See
the README for more info.
To run the figure generating code in binder, click below:
