RCAL-1074: Implement integration test

.github/workflows/run-unit-tests.yml

@@ -34,9 +34,9 @@ jobs:
       - name: Install Python dependencies
         run: |
           python -m pip install --upgrade pip
-          pip install ".[dev]"
+          pip install .[dev]
 
       - name: Run unit tests with coverage
         run: |
           coverage run -m pytest
-          coverage report --fail-under=70
+          coverage report

docs/conf.py

@@ -23,6 +23,7 @@
     "sphinx.ext.autodoc",
     "sphinx.ext.napoleon",
     "sphinxarg.ext",  # For automatic documentation of argparse arguments
+    "myst_parser",  # For Markdown support
 ]
 
 templates_path = ["_templates"]

docs/index.rst

@@ -24,6 +24,7 @@ redshifts using rail/LePhare. Key features include:
 
    installation
    usage
+   regtest_framework
 
 .. toctree::
    :maxdepth: 2
@@ -34,6 +35,7 @@ redshifts using rail/LePhare. Key features include:
    roman_catalog_handler
    create_simulated_catalog
 
+
 API Reference
 -------------
 

docs/regtest_framework.rst

@@ -0,0 +1,2 @@
+.. include:: ../roman_photoz/regtest/README.md
+   :parser: myst_parser.sphinx_

docs/roman_catalog_handler.rst

@@ -29,7 +29,7 @@ The following example demonstrates how to use the `RomanCatalogHandler` class to
      reg_test_data = Path(test_bigdata)
 
      # Specify the catalog file
-     test_cat = reg_test_data / "r0000101001001001001_0001_wfi01_cat.asdf"
+     test_cat = reg_test_data / "r0000101001001001001_0001_wfi01_cat.parquet"
 
      # Create an instance of RomanCatalogHandler
      catalog_handler = RomanCatalogHandler(test_cat.as_posix())

pyproject.toml

@@ -2,7 +2,7 @@
 name = "roman_photoz"
 description = "Library for photometric redshift determination using data from the Nancy Grace Roman Space Telescope"
 readme = "README.md"
-requires-python = ">=3.10"
+requires-python = ">=3.11"
 authors = [
   { name = "Roman calibration pipeline developers", email = "help@stsci.edu" },
 ]
@@ -22,22 +22,20 @@ dependencies = [
   "photutils >=1.13.0",
   "pyparsing >=2.4.7",
   "requests >=2.26",
-  "roman_datamodels>=0.22.0",
-  # "roman_datamodels @ git+https://github.com/spacetelescope/roman_datamodels.git",
+  "roman_datamodels @ git+https://github.com/spacetelescope/roman_datamodels.git",
   "scipy>=1.7.0",
   "stcal>=1.10.0",
-  # "stcal @ git+https://github.com/spacetelescope/stcal.git@main",
   "stpipe >=0.7.0",
-  # "stpipe @ git+https://github.com/spacetelescope/stpipe.git@main",
   "tweakwcs >=0.8.8",
   "spherical-geometry >= 1.2.22",
   "stsci.imagestats >= 1.6.3",
   "drizzle >= 1.15.0",
   "webbpsf >= 1.2.1",
-  # "pz-rail-lephare",
   "pz-rail-lephare @ git+https://git@github.com/mairanteodoro/rail_lephare.git",
   "lephare == 0.1.13",
   "pz-rail-base == 1.1.5",
+  "tox>=4.26.0",
+  "pip>=25.1.1",
 ]
 license-files = ["LICENSE"]
 dynamic = ["version"]
@@ -53,6 +51,7 @@ docs = [
   "sphinx-autobuild",
   "tomli; python_version <=\"3.11\"",
   "sphinx-argparse",
+  "myst_parser",                      # For Markdown support
 ]
 test = [
   "ci-watson >=0.5.0",
@@ -61,13 +60,14 @@ test = [
   "deepdiff",
   "stpreview>=0.5.1",
   "pytest-cov",
+  "romancal @ git+https://github.com/spacetelescope/romancal.git",
+  "jdaviz>=4.2.3",
 ]
 dev = ["roman_photoz[docs,test]", "tox > 4", "pre-commit > 3"]
 sdp = ["stpreview>=0.5.1"]
 
 [project.urls]
 tracker = "https://github.com/spacetelescope/roman_photoz/issues"
-# documentation = "https://roman-pipeline.readthedocs.io/en/stable/"
 repository = "https://github.com/spacetelescope/roman_photoz"
 
 [build-system]
@@ -139,10 +139,14 @@ omit = ["*/tests/*", "*/docs/*"]
 show_missing = true
 skip_covered = true
 precision = 2
-fail_under = 70
+# fail_under = 70
 
 [tool.coverage.html]
 directory = "htmlcov"
 
 [tool.coverage.xml]
 output = "coverage.xml"
+
+[project.scripts]
+roman-photoz = "roman_photoz.__main__:main"
+roman-photoz-create-simulated-catalog = "roman_photoz.create_simulated_catalog:main"