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Add label for LSE

Status: Open.

#51 In spinalcordtoolbox/PAM50;

· jcohenadad opened on Sep 18, 2025

Discussion about the smoothness of the GM mask based on the AMU15 atlas

Status: Open.

#50 In spinalcordtoolbox/PAM50;

· jcohenadad opened on Sep 15, 2025

Update cord segmentation based on contrast-agnostic model

Status: Open.

#48 In spinalcordtoolbox/PAM50;

· jcohenadad opened on Sep 8, 2025

Regenerate the lumbar and top cervical GM mask

Status: Open.

#45 In spinalcordtoolbox/PAM50;

· jcohenadad opened on Sep 3, 2025

Consider scaling registered AMU GM mask to 1.0

Status: Open.

#43 In spinalcordtoolbox/PAM50;

· jcohenadad opened on Aug 29, 2025

Registration approaches on 7T MP2RAGE using <code>disc levels</code> and <code>rootlets_t2</code> segmentations

Status: Open.

#37 In spinalcordtoolbox/PAM50;

· Nilser3 opened on Jun 24, 2025

Improve spine segmentation using totalspineseg ?

Status: Open.

#36 In spinalcordtoolbox/PAM50;

· tletut0ur opened on Jun 3, 2025

<code>PAM50_atlas_3[2-3].nii.gz</code> have pixels outside the cord

Status: Open.

#33 In spinalcordtoolbox/PAM50;

· valosekj opened on Apr 2, 2025

Imperfect overlap of WM and GM mask, especially in in the lower thoracic and lumbar levels

bugSomething isn't workingSomething isn't working

Status: Open.

Bug

#32 In spinalcordtoolbox/PAM50;

· jcohenadad opened on Jan 24, 2025

Update README with recently added labels?

Status: Open.

#30 In spinalcordtoolbox/PAM50;

· valosekj opened on Feb 6, 2024

Is <code>PAM50_label_spinal_levels.nii.gz</code> used?

Status: Open.

#28 In spinalcordtoolbox/PAM50;

· jcohenadad opened on Oct 19, 2023

Modify/Cleanup template files after <code>PAM50_cord</code> is updated

Status: Open.

#25 In spinalcordtoolbox/PAM50;

· jcohenadad opened on Sep 22, 2023