Welcome to organelle-morphology

This project is currently under construction

Installation

To get started, clone the repository and set up the Conda environment:

git clone https://github.com/ssciwr/organelle-morphology.git
cd organelle-morphology
conda env create -f environment-dev.yml
conda activate morph

Interactive UI

To start the graphical user interface, run:

marimo run notebooks/ui.py

Click on the displayed link or navigate to http://localhost:2718 in your web browser.

Tests

The test suite can be run using pytest:

python -m pytest