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Sindi on SINDy — UC Merced Mathematical Biology Seminar

Welcome to the repository for a special seminar session: Sindi on SINDy (yes, that’s me, Suzanne Sindi, exploring SINDy!).

This repository will continue to be updated with future seminar materials, but currently it contains everything for this single seminar focused on Sparse Identification of Nonlinear Dynamical Systems (SINDy).

📚 What’s in this repository

🎓 Accessing the Notebook

UC Merced students can access this repository and run the notebook directly on our campus JupyterHub using the following nbgitpuller link:

Open 3_original_paper_modified.ipynb in JupyterHub

Clicking this link will pull the repository into your JupyterHub session so you can run the notebook and explore the data without any setup.

👩‍🏫 Credit and Contributions

The presentation slides included in this repository are taken directly from Assistant Professor Erica Rutter - my wonderful colleague in UC Merced's Applied Mathematics Department.

My contributions to this repository are primarily in making the materials more accessible for JupyterHub use:

  • Consolidating the materials into a single, organized repository
  • Creating a modified version of the original notebook (3_original_paper_modified.ipynb) that runs cleanly on UC Merced's JupyterHub
  • Adding my personal teaching touches — a bit of “Sindi-ness”

📌 Notes

  • This repository is intended for educational purposes.
  • All data needed for the notebook is included in the repository.
  • For questions or issues, please contact Suzanne Sindi (ssindi@ucmerced.edu).

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Tools and presentations associated with the Mathematical Biology seminar at UC Merced.

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