master-branch-latest

US Core 7 Support (#1620)

* add us core 7 mapping code

* update mappings for us core 7

* add us core 7 conformance resources for testing

* add unit test for us core 7 export

* WIP

* update loinc 787-2 display

* update loinc 786-4 display

* replaced deprecated loinc code

* update loinc 32623-1 display

* update sdoh survey displays

* update cvx 140 display

* update loinc 2571-8 display

* update loinc 18262-6 display

* update display for RxNorm 748879

* update display for RxNorm 1605257

* update display for RxNorm 751905

* update displays in medication costs csv

* update display for loinc 20570-8

* update display for RxNorm 978950

* update display for RxNorm 807283

* revert changes to medications cost csv

* update display for snomed 169553002

* update display for RxNorm 748962

* update remaining contraceptive displays

* update loinc 92142-9 display

* update loinc 92141-1 display

* update loinc 92131-2 display

* update loinc parainfluenza displays

* update display for loinc 92130-4 and 92134-6

* update loinc 94040-3 display

* update loinc 92143-7 display

* update display for RxNorm 831533

* update display for loinc 91148-7

* update loinc 33914-3 display

* fix RxNorm 1367439 display whitespace

* update loinc 788-0 display

* fix RxNorm 1367439 display

* fix RxNorm 198031 display

* fix snomed 90560007 display

* update snomed 415070008 display

* fix RxNorm 284215 display

* fix snomed 5602001 display

* update RxNorm 200346 display

* update snomed 1551000119108 display

* fix snomed 57676002 display

* fix loinc 58410-2 display

* fix RxNorm 108515 display

* fix RxNorm 1664463 display

* update loinc 24321-2 display

* update loinc 51990-0 display

* fix loinc 600-7 display

* update RxNorm 897685 display

* fix RxNorm 1656356 display

* fix RxNorm 2563431 display

* fix RxNorm 205532 display

* fix RxNorm 999999 display

* fix RxNorm 1431987 display

* fix RxNorm 542347 display

* fix RxNorm 1856546 display

* fix RxNorm 748856 display

* fix RxNorm 749762 display

* fix RxNorm 749785 display

* fix RxNorm 1359133 display

* fix RxNorm 1243052 display

* fix loinc 5821-4 display

* fix loinc 13945-1 display

* update loinc 5787-7 display

* fix loinc 24124-0 display

* fix loinc 8247-9 display

* fix loinc 5769-5 display

* fix loinc 75636-1 display

* update loinc 85354-9 display

* fix loinc 788-0 display

* fix loinc 33762-6 display

* fix loinc 33914-3 display

* update loinc 2106-3 display

* fix loinc 85318-4 display

* fix loinc 2339-0 display

* fix loinc 6299-2 display

* fix loinc 38483-4 display

* fix loinc 49765-1 display

* fix loinc 2947-0 display

* fix loinc 6298-4 display

* fix loinc 2069-3 display

* fix loinc 20565-8 display

* update loinc 5767-9 display

* update loinc 770-8 display

* update loinc 736-9 display

* update loinc 5905-5 display

* update loinc 713-8 display

* update loinc 706-2 display

* fix loinc 718-7 display

* fix loinc 30428-7 display

* fix loinc 30385-9 display

* fix loinc 26515-7 display

* fix loinc 42719-5 display

* fix loinc 1742-6 display

* fix loinc 1920-8 display

* fix loinc 33037-3 display

* fix loinc 2885-2 display

* fix loinc 1751-7 display

* fix loinc 10834-0 display

* fix loinc 6768-6 display

* fix bcp47 ru-RU display

* fix RxNorm 808917 display

* fix RxNorm 1648756 display

* fix RxNorm 1997015 display

* fix RxNorm 1648755 display

* fix RxNorm 808917 display

* fix RxNorm 1648755 display

* fix RxNorm 856980 display

* fix RxNorm 212446 display

* fix RxNorm 1946840 display

* fix RxNorm 1648755 display

* fix RxNorm 226719 display

* fix snomed 1501000119109 display

* fix RxNorm 1747691 display

* fix RxNorm 2119714 display

* fix RxNorm 1648756 display

* fix RxNorm 1648755 display

* fix RxNorm 1789958 display

* fix RxNorm 1190766 display

* add pregnancy status observation to pregnancy module

* add pregnancy status to export for us core 6 & 7

* fix assigning pregnancy status profile

* add value_code to pregnancy module

* remove duplicate us core mapping entries for loinc 76690-7

* update category for sexual orientation observation

* update homelessness module to create sexual orientation observations which fit the US Core profile

* update snomed suicide attempt code displays

* update display for RxNorm 999999

* add unknown system to excluded systems to update displays

* update remaining outdated displays

* update RxNorm 999999 to 999970

* update RxNorm 205532 display

v3.4.0

• Hypertension updates to better align onset age with statistics @jawalonoski
• Updates to SNOMED codes to replace outdated and inactive codes @florim14
• Support for mapping condition codes to ICD-10-CM in the FHIR R4 exporter @hadleynet
• Various Flexporter updates @dehall
• Defaults for missing data or configuration settings when using international configurations @jawalonoski
• Use COMPLETED instead of STOPPED for FHIR R4 MedicationRequest resources @jawalonoski
• CSV exporter allow both included and excluded files to be set @facuerrobidart
• Update Gradle and fix warnings @awatson1978 @KeeyanGhoreshi @Jammjammjamm
• Add labs and reports to clinical notes @jawalonoski
• Fix claim, provider and organization serialization @KeeyanGhoreshi
• Fix issue with duplicate UUIDs @dehall
• Fix CSV export claim transaction and payer transition referential integrity through memberId @jawalonoski
• Refactor CSV exporter and add support for splitting large CSV files @Jammjammjamm
• Use US Core 6 as default in FHIR exporter @Jammjammjamm
• Add donation message at end of patient generation @andrequina

v3.3.0

• Numerous bug fixes @jawalonoski, @hadleynet, @dehall, @eedrummer, @NinaLua, @jkiddo
• Improvements to RIF exporter @jawalonoski, @hadleynet
• Addition of Flexporter functionality (see https://github.com/synthetichealth/synthea/wiki/Flexporter) @dehall
• Addition of dental modules @jawalonoski, @hadleynet
• Addition of AWS Cloud Formation config file @pramod2804
• Performance improvements @arvindshmicrosoft
• Updates to UTI module @eedrummer
• Support for US Core 3.1.1 and 6.1.0 @dehall
• Add support for patient middle names @anikamk1828
• Add FHIR bulk data parameters file @jkiddo

v3.2.0

• Improvements to the RIF exporter: improve correlation between procedure and revenue centers, consolidate claim lines for same procedure, add support for PDPM codes, add total charge line items, improve BIC code assignments @hadleynet @jawalonoski
• Improvements to the CSV exporter: add FIPS county code and better matching to ZIP code @jawalonoski
• Improvements to the CCDA exporter: add functional status, fix vital signs
• Module updates: add maintenance and emergency inhaler submodules @jrlegrand, ESRD improvements @jawalonoski, add reasons for encounters @hadleynet
• Engine updates: virtual medicine transitions @eedrummer, exponential probability distribution @jawalonoski, rework insurance @RobertScalfani
• Improve graphviz integration @eedrummer
• New utility to map from BFD RIF export format to CCW RIF format
• FHIR USCore 5 support @dehall
• Numerous bug fixes and additional small feature additions

v3.1.1

Bug fix release. Add missing identifier in patient home's location FHIR resource (@jawalonoski).

v3.1.0

• HIV module enhancements - @jawalonoski
• New sleep apnea module - @jawalonoski
• New acute myeloid leukemia module - @casey7083
• New home health module - @jawalonoski
• New skilled nursing module - @jawalonoski
• New hospice module - @jawalonoski
• Refactor of metabolic syndrome module - @dehall
• New BFD RIF exporter - @hadleynet, @jawalonoski, @babraham33, @hkong, @cbrunefearless, Karen Bates
• New JSON exporter - @eedrummer
• Add support for USCore 4 to FHIR exporter - @jawalonoski
• Add support for patient middle names - @jawalonoski
• log4j security fix - @omarismail94
• Support for Java 17 - @dehall
• Updates to HAPI, MDHT and other dependencies - @jawalonoski, @eedrummer
• Autoscaling of generator thread pool - @hadleynet
• Ability to set simulation end date in the future events via -e flag - @hadleynet
• Numerous bug fixes - @eedrummer, @dehall, @jwalonoski, @mgramigna
• Test suite performance improvements and bug fixes - @eedrummer
• Documentation improvements - @eedrummer, @lmsurpre

v3.0.0

• Updated GMF to version 2. New features include specification of random distribution types (uniform, gaussian, exact) - @eedrummer
• Improvements to the CSV exporter including export of claims - @dehall
• Improvements to the C-CDA exporter, primarily bug fixes - @jawalonoski
• Addition of vaccines to COVID disease module - @eedrummer
• Metadata about a Synthea run is now exported to capture runtime specified parameters - @dehall
• Fixes to allow running of Synthea tasks from uberJar - @hadleynet, @dehall
• Numerous miscellaneous bug fixes and enhancements to Synthea code and disease modules - @eedrummer, @dehall, @jawalonoski

v2.7.0

• Numerous bug fixes
• Updates to service costs (@RobertScalfani)
• Updates to demographics and ZIP codes (@dehall)
• Update FHIR exporters to use HAPI 5.2 (@hadleynet, @dehall)
• Update FHIR exporters to include procedure codes for ImagingStudies (@eedrummer)
• Updates to Opiod Pain Management module (@yanheras)
• New Spina Bifida module (@yanheras)
• New Cerebral Palsy module (@casey7083)
• New Sepsis module (@casey7083)
• Improved FHIR transaction bundle export (@hadleynet)
• Updates to Hypertension module (@rutemartins)
• Switch CI to GitHub Actions (@dehall)

v2.6.1

Synthea V2.6.1 Release Notes

• Fix a bug where procedures with a delay could be recorded twice

Synthea V2.6.0 Release Notes

• Updates to FHIR R4 and US Core IG exporter to track latest version and add new vital signs (@jawalonoski, @LtSurgekopf)
• Add CPCDS exporter (@mosiermt)
• Additional physiology capabilities and export of media attachments (@nanowizard)
• Support for different output text encodings (@jcgeer)
• Added new Health Record Editor functionality (@eedrummer)
• Added Growth Data Errors editor (@eedrummer)
• Added support for snapshotting populations for later updates (@hadleynet)
• Added a COVID-19 module (@jeffeastman, @jawalonoski, @eedrummer, @dehall)
• Added a symptom exporter (@afansi)
• Added support for devices and supplies (@dehall)
• Classpath fix for SLF4J warning (@jaferkhan)
• Added value set based selection of codes (@johngrimes, @amol-wani-elimu, @kaicode)
• CQL engine updates (@pete-thompson, @jawalonoski)
• Improve reproducibility by refactoring use of randomness (@jawalonoski, @hadleynet)
• Build and runtime improvements (@johngrimes, @theo-m)