DelSIEVE_simulator

The simulator for DelSIEVE is modified based on SIEVE_simulator. It is used in the DelSIEVE paper to generate simulated datasets.

Compilation

DelSIEVE_simulator uses cmake to build the executable.

$ mkdir build
$ cd build
$ cmake ..
$ cmake --build .

The built executable is located: build/bin/DelSIEVE_simulator.

Run

To run DelSIEVE_simulator, use the example configuration file parameters:

$ ./build/bin/DelSIEVE_simulator -Fparameters

Configuration files

DelSIEVE_simulator uses a similar input as CellCoal does. Please refer to the manuals of CellCoal. Those configuration files used in the DelSIEVE paper can be found in the DelSIEVE_benchmark_pipeline repository, under directory simulation_configs.

Funding

This project received support from

• the Polish National Science Centre SONATA BIS grant No. 2020/38/E/NZ2/00305,
• European Union’s Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie grant agreement No. 766030, as well as
• European Research Council (ERC-617457-PHYLOCANCER), the Spanish Ministry of Science and Innovation (PID2019-106247GB-I00), and Xunta de Galicia.