This repository was archived by the owner on Nov 29, 2021. It is now read-only.

Testing

Jump to bottom

tdayris-perso edited this page Mar 31, 2020 · 2 revisions

Testing

Unit testing

Scripts embedded within this pipeline can be tested with pytest. Go within the tests sub-directory and run:

make all-unit-tests

Pipeline testing

The smoke tests are used for continuous integration, just go within the tests sub-directory and run:

make test-conda-report.html         # To test pipeline
make test-singularity-report.html   # To test pipeline within singularity

CI

Continuous integration is available. See the "Actions" tab on Github.

Typos corrections and issues are welcomed