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Statescope
Statescope PublicStatescope is a computational framework designed to discover cell states from cell type-specific gene expression profiles inferred from bulk RNA profiles.
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- Statescope Public
Statescope is a computational framework designed to discover cell states from cell type-specific gene expression profiles inferred from bulk RNA profiles.
- StatescopeR Public
- CNA_clonality Public
Code associated with manuscript "The added value of genome-wide copy nubers to objectively resolve clonality of multiple lung tumors with ambiguous or inconclusive mutational diagnosis"
- Mutation_Clonality Public
Code associated with manuscript "Performance and considerations in the use of diagnostic mutation panels for clonality testing in non-small-cell lung carcinoma"
- OncoBLADE Public
Hidden RNA profiles of cells in the tumor microenvironment accurately revealed by malignant cell fraction-informed deconvolution
- QDNAseq.snakemake Public
- translocation-snake Public
Translocation detection pipeline by next generation sequencing. A combined approach of BreaKmer, Gridss, Wham and novoBreak.
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